Array 1 577508-576748 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP030103.1 Mycoplasma cloacale strain NCTC 10199 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                         	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	========================================	================================	==================
    577507	    40	  82.5	    31	........T......T....C...............GCGG	AACATTCACAAAACATAAAATTCATATCTTT 	G [577474]
    577435	    40	  95.0	    32	...............T....C...................	TGGCAATTTTTAAACATTCCTGCCATATTTTC	
    577363	    40	 100.0	    32	........................................	TGACAATTTTCAAACATATCAGACATATCTTC	
    577291	    40	  95.0	    32	...............T....C...................	TAACAATATTCAAACATTTTACTCATATCTTC	
    577219	    40	 100.0	    32	........................................	TGACAATAATAAAACATTAAACTCATATTTTC	
    577147	    40	 100.0	    32	........................................	TGGCAATATTCAAACATATAAGACATATCTTC	
    577075	    40	  95.0	    32	........T......T........................	CGACAACCACTAAACATACTATATGTATCAGT	
    577003	    40	  87.5	    32	T.A.....T......T....C...................	TGACAACCTCTGAACATATAAGACATATTTTC	
    576931	    40	 100.0	    32	........................................	TGACAATTTTCAAACATATAAGACATATTTTT	
    576859	    40	  85.0	    32	T.......................ATT.........AA..	TAACAATTAGAAAACATGTTTTTCATGTTTTT	
    576787	    40	  80.0	     0	T..C..........TGA......TA............A..	|                               	
==========	======	======	======	========================================	================================	==================
        11	    40	  92.7	    32	AACATTTGAAGTATCCCAATTTAATGGTTGATTAAATGAA	                                	       

# Left flank :   CATTCTATCTCCTTTAATAAATAATGCATATTAAATTATAAATTAAATTTAATGATTTCCCCTTGAATATAAATGTTATTGGGGATTTTATATTTGATGATATTCTTCTGCTTTTTTGCAAATGTTTATTTTAATATTTTTTATTATTTTTTGATTTAATAAATCAAAAAATCACTAAAAATTTTCAAATTTAATATAAAAAAAGTTGAAACTAGTTCAACTTTTCATGTTTCTTTGTTTGTTGAGGTTTTATATAAATATAGATTTTAATTCTCATCATCATCATCATTTTCTATAATTTTAAATTTCAATAGTGGTATTTCATCGATCTCTTTTTGATCATTAAATCATTCCTTACTATGTTTTGTTTCATTATCTTCTTCTTCATTAGATAATAAAATGCAACCATGGAACATATTTTTTGTTTTATTATAAGGCATTTTAAAATTCATTTCATATTCTAATTCCTTACAATTTCAGAACATATATTCCATATTTTC
# Right flank :  TAGCAATCTGCAAACATATATTCCATATTTTTTACATTACTGGTATCAAAATTAAGTGGTTTATTTATAAATGATGATTCAAACATTCTCTCCATATTCAAAACATTAGAAGTATTTCAAGTTTCAATTCCATCAAATTTCTTTCTAAGAGAATTTTGAAATAATGAAGACATATCAAACATCCTTGAAGTATCAATATCTCCTAAATAAATATCTAAGTTATTTACTAATTCCTTAAGTTCTTCCTTTGTTAATGGGAAATATTTTTTATTAGTCATTTTATCCCCAATCTTTTGATTATTTATCACTTTTAGTTCTATTGCATATTTTGTGTGTTAATTGTGCATTTTCTTCAGTTGTTAACCCACCTTTTGAAAATGGATTGATGTGATCGATTTCACATAAATTGATGTCATTTATTTGTTGATTGCATATTGGACATATATAATTTTGTTTTTTAGCTAATGATTCTTTAATATCTGAATTAAAAAATCTTTCAT

# Questionable array : NO	 Score: 2.51
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AACATTTGAAGTATCCCAATTTAATGGTTGATTAAATGAA
# Alternate repeat :   AACATTTGAAGTATCTCAATCTAATGGTTGATTAAATGAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-2.80,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [19-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.41   Confidence: LOW] 

# Array family : NA
//