Array 1 110793-108529 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZH01000152.1 Clostridioides difficile strain 173070 isolate 173070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 110792 29 100.0 37 ............................. TGTTATCGTCTTTCACAGTTTGAATATGATACTTTTT 110726 29 100.0 37 ............................. GATTTACAAGGTCAGTAACATCATTAGCAACTGGAAT 110660 29 100.0 36 ............................. GCTTTTAATTGAGCTTCATTTAGATCATAATCAGAG 110595 29 100.0 36 ............................. ACAAAAAAGCGATATAGATAAGTTTAGATAGTGCAC 110530 29 100.0 37 ............................. TTCTCTAGTAATGGACATTACTTGACTTAAACTTTTG 110464 29 100.0 37 ............................. CATTTGCAAAAGTAAAAAGCCACTCTGTGCGAAAGAG 110398 29 100.0 36 ............................. ATTAGAGATGTTTATGGAAAACATGGATTTACTAAA 110333 29 100.0 37 ............................. TTATTTTTAAATTTACGAAAACGAATATATTCAAAAA 110267 29 100.0 37 ............................. CCCACATCAGTTGCAAAACACTTAGTAGCACTTAAAG 110201 29 100.0 36 ............................. CTAATAGATAGGAGGTGAACAAATATGGAGTTTCTA 110136 29 100.0 37 ............................. TCAAATTTTCTATTTTTTTATCTAGTAACTTTACTGG 110070 29 100.0 37 ............................. TATCATATAAGAAATTTTAAGTTAAGTACACTATTTA 110004 29 100.0 36 ............................. ATAAGTGACGAAACTCCTGTAACAAAGCCATCTCTA 109939 29 100.0 36 ............................. TGTGGATGACCAAGTCAATGATATGTATGACAAGGA 109874 29 100.0 36 ............................. TTGGGCGTTTCTGTTTTTTCAAGAGCAGTTGACTTA 109809 29 100.0 37 ............................. AGAGATATTAACAGAAGAGGAATTTAATGAAAAGAAA 109743 29 100.0 37 ............................. AAGAGTGGACTCTGGATGTTATAAACTTCTTAGATAG 109677 29 100.0 37 ............................. CGAGATTCTTTTGAGAGATATGCAATAAGAGCAACTA 109611 29 100.0 37 ............................. GCTTTTTGTATTGCTAATTTTGAAATTAATAAAACTA 109545 29 100.0 37 ............................. GTATATGTATCTACAGGTAAAGTAGAAATAGGTAATA 109479 29 100.0 37 ............................. AAAATTATATTTTCTTTAGATGATGATGATTTCTTAG 109413 29 100.0 35 ............................. CATTTATTCTTGGAATTATGGAGTCGAGTTGAACG 109349 29 100.0 38 ............................. TAATTAATGGTGTTATAAAGTTTATTTTTTTGTTTTGC 109282 29 100.0 37 ............................. TATAAATATCCAGTCCATTTTACGCCACTTTGGTACT 109216 29 100.0 37 ............................. GAGATTTTTTTAACAGAAGAAACACCTAAGTCAAAAG 109150 29 100.0 37 ............................. CTCAATCCAACCAAAGCAGCAATTTTGACTGTCTTAG 109084 29 100.0 38 ............................. ACAGCAGATATTGAGTTATAACTTGAAGGAACACTCGG 109017 29 100.0 37 ............................. TGTTGTTTAAATCTATTTCTTATAGTTGTACGACCAA 108951 29 100.0 37 ............................. GACAGGAAAATAGTTTATCAGAGCTGTACTATAGAAA 108885 29 100.0 37 ............................. GCTGTTGATGTTGATTTTTCTCCACTTTGGGAATCTA 108819 29 100.0 37 ............................. TTTTAAATAATCTGAAATAGTTTTTATATCATCATTT 108753 29 96.6 37 ....................C........ GCGGAATAAGGGGGACTTAAAATGAAAAATAATATAG 108687 29 100.0 35 ............................. AGCATCAACATTAAATAAATAGGTATAGCTAAATC 108623 29 100.0 37 ............................. ACACGAGCGCCGAACATCTTAGCAAGTAAAGTTGAAG 108557 29 82.8 0 .............C..A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 35 29 99.4 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ACTTTATAAATGATGAAAAGTATAGAGTTTTAAAGGCTTGGTGGTAAAATATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCATTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGAGATATTACCGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAACATTATTGATAATAGTGAAGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCATATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGAGTGCAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAATATGATAAAAATCAACACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATCAAATAACAAAGACATAAATAAAATCATGGAAATATGGGAAGAAAGCACAAAAAAAGCACATAACTTTATAAGTAAAGAATACTGGAAAAATAACTATAATACTGTCAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGAAGATGAAATAAAAGGATTTATAAGTATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAACCCCAAATACCAAAATCTAGGTATAGGAGGTAAACTTTTAGATTATGTAACTAAAAAATATAAAAAGCTAAGCTTAGCAGTGTACAAAGATAATAAAAAAGCAGTTGTATTTTATAATAAAAAAGGTTTTAATATATTAAAAGAGCAAGTAAATGAAGACTCTGGATTTAAAGAATACATAATGGAATATAGTAAATAACATGAGTATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 78329-78945 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZH01000132.1 Clostridioides difficile strain 173070 isolate 173070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 78329 29 100.0 36 ............................. TTCTTTTTCGCCAGTTTCTCTGTTTGTTACAAGTGC 78394 29 100.0 37 ............................. CAAGAAATCAACTCATCATCATAATGTTTTTTGACTA 78460 29 100.0 38 ............................. GTAACTAACTCACTAGTCATATTATCAAAACCTCCAAC 78527 29 100.0 37 ............................. CGTTTATCTTCTGATATAACTAAGATATTCTTTATAA 78593 29 100.0 35 ............................. ATGGGTTTAATTCATCACTGTAAACACTATTCCAA 78657 29 100.0 38 ............................. TGACGTAGATGGTGAGGATTATTTAGTATCACTTAAAA 78724 29 100.0 36 ............................. ATCTTTGGAATGGATACATAGACCACTTGTGGAAGA 78789 29 100.0 34 ............................. AGTTTTGAATTTGCTATTGAAAGTAATGGAGTTA 78852 29 100.0 37 ............................. CTAGATATGAATATTTAGAGGATTATTCGTACTTTCT 78918 28 86.2 0 ..................TA...-A.... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 98.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TGATGTTGACTGACATTTAACTGACATAAAACTGAACATTATTTAAAGAGAACATTACTTATATTCTCACATGCTTCCTTATCCATTTTATCTAAAATGTGAGAATGGCTATTCATAGTTATTTTTATATCAGTATGTTCTAATTTTAAAAAAATTGTTTTTATATTGGCTTCAGCTAGAAATATAATAAAGAAGTTAAAAGAAGTGTTGAATTTATGGGCAATTACACAGGAAGAATATAATAAACATTTACAAACACGTAGGTGCTATTCAATTTATAAATTATTCTATTTTTATTTTATAGTATAAATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGACCGGTATTTATGCTAAAGTATGCTTTAACAGTTGAAATATAAGGTATTGAGAACGTTTGAGAACTATTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGAGTTGTATGTGTATAAGTATTGGAAATGCTCAATTTATTTTGAGG # Right flank : TATTATAAGCCATATCAAACATAAAATTTATATGTTATAGGTGAAGGAATATGCAATAAGATAAGCTTTATGACTAAAGAAAAATATAATATGCTAAAAGGGAATGATAGATTAGAAGGTAGCAATTAATTAGTTGTTACCTTCTTTTTTACTTGAAGTACTAAATTCTATAAGCGTTTTATTATAAGTAGCTTATATAACAATATATCTCCTTCTAATTAAATAATAGGATACCAGTGTTATAATGGATACTAGTATCACAGCTATCATTGCAATATATGAACTTTTTATTAATAAACCCATCATTATGTATTCTAAACCTATCAAATAGTGGTAAAATATTTCTAGTTTCATGGTTTTTTCTCTATCTATATTTCCATATTTTAATTCTAATTTATTGAGATATTTTTTATTACAATAATTAGTTTTGTGTTTAATCAAATATCTTATTGTAGTACCTACTATGTTTCCTATTGCAATAAGTATAAGTAAAATATTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5299-4945 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZH01000130.1 Clostridioides difficile strain 173070 isolate 173070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 5298 29 96.6 36 ............................G TGAGAAAAGAACTAAATAATCCTCTTTTAAGTGCAT 5233 29 100.0 36 ............................. TTTATAAACAAAGAATAGATTTTATTTAATGTTTCA 5168 29 100.0 36 ............................. TATAGCTAAATCTATTGTAGATTTAATTATTTCTGC 5103 29 100.0 36 ............................. GACTTTATATAAACGCTTGTGTTTGTGTCTATGTTA 5038 29 100.0 36 ............................. ATATCTTTGCATGTGTTAGTTAATGTATTGCCCTCT 4973 29 72.4 0 ...............AAAT....AG..TA | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 94.8 36 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TCTTTTATTTCATCATTAGAATATGTTTTTCCAATTTGTAAGTTACTTATAGAATTATAATTATTCATTATATCTAATCACCTCTATTTTTATATTAATTTAATTGTTGTTTTAGTGATAAATCAATACTATTTAGAAAATATTTTATCTTGTATTACAATTCTTGCTTTAGGTTTTTATTGTTAATATCTTTAAATAATATAATAATTTAAGTATATAAGACTTTATAAATGCTTTCTATATATTTACATGAAAAACTAAATTTATTTTTGCTAAGCTACAAATGGGTAGAAATATTTAAAAATAATATATTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGGTATTTTTGATAAAGTATGGTTTAAACATTGAAATATAAGGTATTGAGAGTGTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATATATGTAAGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : AAACATGTATTCATATTTAAACTATGTATCTATATAAAAAAGTGAACCCTGTCAACAAACCACTTTTTTATATAGATAAATTATTATTTTGTTTTAAGATGTAACATACTAATGATAAATGCTTATAACAACATGTTTATCATTAGTATCTTTAATACATAAAGGTTAATTTTTTACATAAGCTTATTTTTTAGAAAAATGAGCGGTATCAATAAATATCTTGTCTAAATTTTCTCTAGTAACTAATTGACCAGTTATAAGATTAGCTTCAACAGTAACACTACTTTGATTGTCAAACTCTGAACTTGAGTTTAAAGGTTCATTCTTATCCATATAAGCAGCTTTATTATTCGCATATACTATAACAATTTTTACCATGTGCTTTTGATAAATACAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATACAATTTAGTTGAATCACTAGCAAAAGCAACACCAATGCTTAATGTTATTTTGTGTTTATCTTTTATTCTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 15260-14708 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZH01000077.1 Clostridioides difficile strain 173070 isolate 173070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 15259 29 100.0 36 ............................. AATGAATTAGTTTCTGCAAGAGAAGCAAGAGAAAGA 15194 29 100.0 36 ............................. AACTATATATTGCAAAAAAATATGGAGTCACAGAGA 15129 29 100.0 36 ............................. TCGCCCTCTCCAAGTTCATCACTCCCACAAACAGGG 15064 29 100.0 37 ............................. GAAGATAAATTTTTCTTTATACTTCTTCTTAGTAATC 14998 29 100.0 37 ............................. CAGCACATAATGGTGGTGGTAATCCAGTGTTTATAAA 14932 29 100.0 36 ............................. TATTTATATAAATATAAAATACACATCTATAATTTA 14867 29 100.0 37 ............................. AGGAAAAACCTTGCTTGTCTTTTAATTAGTGGTTCTA 14801 29 96.6 37 ............................T AATGGAAGCAAGATAATTTTTAAAGGTATGGATAATT 14735 28 82.8 0 G...................-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.7 37 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : CATTATATTAATATAATAAAAAAGTACTAATGAGTGACACTAGTACTTTATAACTACTTTTACATTTTTTTACTGTATAAAACAGTGGGTATAGTTCACAAGAGAGTGACTTAGATGTTGAGCTTAAATTTTCATTTAAGTTCAAAAAAAATAAGCATTAAATTGTTTAGAACTTCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGCTATTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGTTCGATTTTTGTAATAAAATATGGCTTAACAATTGGAATACAAGGCATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGG # Right flank : TTAAATAGAAAAAAGAAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTTATAACTTTTCATCATCTTCATATTCCATAATATCACCTGGTTGGCAGTTTAAAGCTTTACATATTTTATCAATAACATCAAGGGAAACATTTTTATTTGAAGATAATTTTGCTATTGTGGTAGAAGAAGCTCCTATTTTTAATCTTAGCTCTTCTTTAGTTATGCCTCTTCTGTTTAGCAAGTCAATTAGTTTGAAAAATTTTATAGACATGTTAATACCTCCTATATATTTATATAATACTATATATCTTTATTAAAGTAAAGATATATTTATTAAAATAAATAAAAAGTATTGACATTATTTACTAAATAATGTATTATTAGAGTATAAAGATAAAGAAATCTTTATAAAAGTAAAGTAATAAGGAATAAAATAAGGAATATTCTCTCTCGTCAAAGTTTAAATATTCCTTATGGCATATAACTAATATGTAATATAATTATATGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 239-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZH01000177.1 Clostridioides difficile strain 173070 isolate 173070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 238 24 95.8 38 ...................T.... GAACAACCTTCGTATACACTCAGATTATTCCGTTACTT 176 24 100.0 38 ........................ AAACAAACTTCACATGCGTTCAGTTTATTCTGTTGCTT 114 24 95.8 0 ...............G........ | ========== ====== ====== ====== ======================== ====================================== ================== 3 24 97.2 38 AAAGTGCTAACGCACATCGCCAAC # Left flank : CTAAATATATATGCAGTTTT # Right flank : CGGATAAATCCCGTTGCTCAAAGTGCTAATTGAGTATTCGTAAAAACGAACCCTCAAAATTAAACAGTAGGCAATTCTCCTTAGAAAGGAG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGTGCTAACGCACATCGCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //