Array 1 51-1883 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUC01000094.1 Acinetobacter baumannii strain Pesh-04 Pa1_S1_L001_R1_001_trimmed_contig_94_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 51 30 96.7 30 .............................A TAAAACGCGCAAAAAAATATAAGGGACGTA 111 30 100.0 30 .............................. AAACTGATTTACAAGCTTGATCAGTAGGCC 171 30 96.7 30 ............................A. CATGAAGCTTATTAAATGACTGACATGGCT 231 30 93.3 30 ............................AA AGATTCTAGCCCCCTCAATTGAGAAGTTAT 291 30 96.7 30 .............................A TTTAGAAAGCTTGGAAAATAAAGGTGACTG 351 30 100.0 31 .............................. TGCCGATGCGTGCAAACATTTGCTCCGCTTC 412 30 100.0 30 .............................. ATAGATGGCTTTAACTGACTCCCAGCCCAT 472 30 96.7 30 .............................A TAAGAAAAATGCAAAAAAGGCATTTATTAG 532 30 96.7 30 ............................A. ACACATGTTTTTCTAATAAGAATAAGACAA 592 30 100.0 31 .............................. ACCAGATAGCAACTCTCTAGGTCAGATAGAC 653 30 93.3 30 ............................CC AGACTTGATTTTTATCACCATTGAAGAGTT 713 30 96.7 30 .............................C AGGTAATAAAAAACCGCCCGAAGGCGGTAT 773 30 96.7 30 .............................C AAAACGTATGGGTTATTGATGCTCAAGATT 833 30 96.7 30 .............................C GTTGCTACGCGCCACGGCGCACCCATCGTT 893 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 953 30 96.7 30 .............................A AAATCACATCAGGGAAGTGAAGGCGAGCTA 1013 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 1073 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 1133 30 93.3 30 ............................AA TAGAATTAAAACCACGTTGATAATATAGGT 1193 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 1253 30 93.3 30 ............................GA CCCATAAATCAAACAAGCCAACATAATTGA 1313 30 100.0 30 .............................. CCTCAACTGACATTTCCAAATAGTAGAGGC 1373 30 96.7 30 ............................A. AAAGCGCACAACCCATTGATTTGTATTTTT 1433 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTGTGAAT 1493 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 1553 30 96.7 31 ............................G. AAAAAAGAGCATTTCCAGCAAAAATTGACGA 1614 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 1674 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 1734 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 1794 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 1854 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 31 30 95.1 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCATACGCCATTTAGAAATACCAAACCAATCAGCAATGGAAAAACCACCGG # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 56820-57629 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUC01000095.1 Acinetobacter baumannii strain Pesh-04 Pa1_S1_L001_R1_001_trimmed_contig_95_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 56820 30 100.0 30 .............................. TCGGCACAGGTAGCAGTTGAGCAGTCATCG 56880 30 93.3 30 ............................GA GTTCTTTCATAACGTAGGCTTTAATGCCTG 56940 30 96.7 30 .............................A CGTTTCCGCAAATCTGCGAAATACTCGTTG 57000 30 96.7 30 .............................A TATAGTGGCATCTTCGAGAGTTAAAGGCGG 57060 30 96.7 30 .............................T CAGAATTTTGTTTACAAGTTCTAAGCGGGA 57120 30 100.0 30 .............................. TTTGAACATCTAATAATTGAGCTGTAATAC 57180 30 93.3 30 ............................GC CTCCAATTGATCCAATTGATCAACCTCCAT 57240 30 96.7 30 .............................T ATGGTGGTTGTTATAAACCGCCTAATGATA 57300 30 96.7 30 .............................T TAGAAGACGTGGACTCCCCCAACCTTTCAA 57360 30 93.3 30 ............................TT TGCGCTCTTGCGGTCATTATCAAAGACCTC 57420 30 100.0 30 .............................. CATGTGCTAAATCAGGGAAAAGAAAAGCCA 57480 30 93.3 30 ............................TA ATTATAATCGCAATAGCTTCAATACTCCTA 57540 30 100.0 30 .............................. TGCGTGAACATTATTCTTTCTGCATCAGCT 57600 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ============================== ================== 14 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAG # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GTACGTTCAACGGTCAGCAGATTTGTGTTAGTTCATGGCGGCATACGC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //