Array 1 118017-117319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLW01000002.1 Porphyromonas gingivalis strain WW2842 NODE_2_length_215523_cov_30.4292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 118016 37 100.0 29 ..................................... TTTTATTTTGTATCAAGTATTGTATATCA 117950 37 100.0 29 ..................................... AAGATTAGAATGAAGAAGAAAAGAAGTTG 117884 37 97.3 30 ....................................C CGAAGAAATTCAGTTGCGCAGCCACTCCAA 117817 37 100.0 29 ..................................... TATTTAAGTTAGTTTTAATTGGTGTTATA 117751 37 100.0 29 ..................................... TATTTAAGTTAGTTTTAATTGGTGTTATA 117685 37 100.0 29 ..................................... TCAGATGTTCGATCGTCATAAATACGCTC 117619 37 100.0 29 ..................................... CTTCATCAGAACACCTCCTCTTTCTCTTC 117553 37 100.0 29 ..................................... CATATTCTTTTCCTCCTGTCTTTTCCTTT 117487 37 100.0 29 ..................................... TTAAAGTAGAAGTCCAATTCTCTTTCTGA 117421 37 94.6 29 .......G............................A TGACCATCTCTTTCATTAGGGTCATTATA 117355 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 11 37 99.3 29 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACT # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTATCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : ATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAGATGGATAGAGGAAGTGTAACTGCCGATTGTGTTGGTGCAGAGCTGTTCGTCCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTTTATGATCGCTACGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGGGTGATGGGCTTCTTCGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 77794-77163 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLW01000003.1 Porphyromonas gingivalis strain WW2842 NODE_3_length_207928_cov_30.7461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 77793 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 77726 36 100.0 30 .................................... ACCAATATAATCATTAAAGAACTTGGAACT 77660 36 100.0 30 .................................... AACTTCAGAAGATGGAATTGTGACAACCAC 77594 36 100.0 30 .................................... TCCCGAATTGCTGCTTATCGTTAAAAATAT 77528 36 100.0 30 .................................... ACGCGACTCCTTTTTGACACTTGCGAAAAC 77462 36 100.0 30 .................................... AGCATGATTAAAACAATAGCACTGTTTTCT 77396 36 100.0 30 .................................... GATAGTATGGTGTATTGTTCTAGGCGTATT 77330 36 100.0 30 .................................... ATTAAGAAAATTTGATGTTTATGGTATAAA 77264 36 100.0 30 .................................... AAGTTTTATAGATAAAATCAGTTAATATAA 77198 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 21168-26449 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLW01000005.1 Porphyromonas gingivalis strain WW2842 NODE_5_length_125163_cov_34.2248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21168 30 96.7 36 A............................. TTCTTTTTTCTTTGAGATATTCGAACTCACCTCTGT 21234 30 100.0 36 .............................. AACGCGGCGATATCTTGGGCTATCAGCAGCGGTTTA 21300 30 100.0 35 .............................. GGCAACAGACACGCAGGCTTCTATCGTCTACTGCG 21365 30 100.0 34 .............................. AACTAGGAAAGCAAATTCCTTATGTATTTCTTGC 21429 30 100.0 35 .............................. AACATCCATCGAGCTCTACGCTTACCGAAACGGTA 21494 30 100.0 36 .............................. CCCCGGAGGCTGCAGAGATAAAGGGATATATCGAGA 21560 30 100.0 37 .............................. ACGGAGTTGACCGAGCGCGAACTGCGCTCACGAGTGT 21627 30 100.0 36 .............................. CCAAAAACTCCTCAATCTTTTTATTAAAATGCCTAT 21693 30 100.0 35 .............................. TGGGACACAAAGCCACCGTGTTCAAGCGTATCTTT 21758 30 100.0 36 .............................. TGTTTCCAATTTTTTTATTAAGTTAATTGTCATTTG 21824 30 100.0 36 .............................. TATGTATTCGTGAAAATAACTTGTATCTGTTCTCGC 21890 30 100.0 35 .............................. TGAGCCGGGCGACAACCCGCGCCCCGCCGCTACGG 21955 30 100.0 36 .............................. TTCAAGGGGGATGTCGTCACGAGAGGCCACAGCGAT 22021 30 100.0 36 .............................. AAGAACGAAAAAGAAATCGAAAAACTCAGGAACGTT 22087 30 100.0 36 .............................. AAGTCAATTAAGCAGTATCAAATGAAGTGCGGATAT 22153 30 100.0 35 .............................. TATACTGTTAGCAGACGAAGAGGACTTTTTTAATG 22218 30 100.0 36 .............................. TGTGTATAAGAACACTTCGATGCTTCTTCAAACCGT 22284 30 100.0 36 .............................. AACTAAAGATATTACACTAACATATCTGAACTATAA 22350 30 100.0 37 .............................. AGTGCGCTCCCTCTTTAACCCCGAGCGAGGGCATATT 22417 30 100.0 35 .............................. GAATGGATCAAAAAACGGTTCGGAATCGAGGTCAC 22482 30 100.0 36 .............................. TCCGTCACAGAGATATACACGCAAAGGAGAGAGCGG 22548 30 100.0 36 .............................. TGCGCTCCTTGCCGTTTTGCTCATTTATTACGCAAT 22614 30 100.0 36 .............................. CGAAAAGCTGAAAACCCGACTGTTCCCTTCTCTTCG 22680 30 100.0 35 .............................. TTGCTGCTCGACGAGGACGGTAAGGTAAAGCCGTT 22745 30 100.0 36 .............................. ACTACGCCCTAATCTTTTCAGATTTCAATTCCCGTA 22811 30 100.0 36 .............................. TGGAGGCTATTTGTTTTAACTTAACATTAATACACA 22877 30 100.0 36 .............................. AAGCTCTAAGGGCAAGCTCAATTTTGTGTATAATTC 22943 30 100.0 36 .............................. AAGCTCTAAGGGCAAGCTCAATTTTGTGTATAATTC 23009 30 100.0 34 .............................. ACAGACGCGCAGATACAGGCAATGAAAGTGATGA 23073 30 100.0 35 .............................. TAGAAATAGCGCAACGAGCTGCATGGCATATATAT 23138 30 100.0 37 .............................. TCGACCTATTGCGGATCGATGAGCTTAGCACGCTACT 23205 30 100.0 36 .............................. AAAGGTAGAAAATAATAACAAACACACGTATTCCGT 23271 30 100.0 35 .............................. TCTATCGTTATGTAATCTCCGCCCCGACCGCCGCG 23336 30 100.0 34 .............................. AGTTCGTAAAGAAGCTGGAGCTGACTCCTAACGT 23400 30 100.0 35 .............................. AAGAACTAATAGAAGTAATCAAGCACAACTTTCAT 23465 30 100.0 34 .............................. AACTTTCTTTCTGCTATTTGTTAAATAATTACAA 23529 30 100.0 36 .............................. TCTGTTAAAAAGCTATCAAGTAGTTCTTTTTTTGAT 23595 30 100.0 36 .............................. AGTGAAAAGGACACATTATACCATTGATATGACGGT 23661 30 100.0 35 .............................. AACCTTTCGCATTCAAGACAACTTCTACAGTAGAT 23726 30 100.0 36 .............................. CGCTGCCTCCGTTATTTCATCGATTTGTTTCCATTC 23792 30 100.0 36 .............................. CTCTCCCGTAGAGAGCTTCGAACTAAGTCTGTTTAA 23858 30 100.0 34 .............................. TTCTATCTCGCCGATTCGCTTTAGCTCTATATTT 23922 30 100.0 36 .............................. GCGCATAAGGCGTTGGAGCTTTCCACGTCTCCCGTG 23988 30 100.0 37 .............................. GCAAATTGTCAGAAAACCGCCCTCCCATCGAAATCCG 24055 30 100.0 34 .............................. ATGCGAATCCCGTACCGCTCTCTCATCTCTTCGT 24119 30 100.0 36 .............................. TTCCTCCCATACGTCACCCGTGTAGTCCTCAACACA 24185 30 100.0 37 .............................. AATTCGCAAATTCATAAAACATAGCCGCTATCTCTTC 24252 30 100.0 36 .............................. GTAAAGAGGCAAATTTGAAAAGAAAAAACGGGCTGA 24318 30 100.0 36 .............................. AGCCTTATAAATTCAAAATATATAGGGTTGAAATAG 24384 30 100.0 34 .............................. ATACTGCATTCGAATCTCGCGAGTCGCATTGTTT 24448 30 100.0 36 .............................. GAACCTTTCGCATTCAAGACAACTTCTACAGTAGAT 24514 30 100.0 36 .............................. ATTCCGTCCCGGCGGAAAACCCACAAGAAAACGGTG 24580 30 100.0 36 .............................. CGTTCGGGCTTCGGGCAACGCTAGCGTGGAGGCTTG 24646 30 100.0 36 .............................. TCATATGCCAGCCGCGCGTATTTGTTCCTACGCCTT 24712 30 100.0 36 .............................. CAGATGTGGCCAACGCATCTACGAGCGCGACGGCTC 24778 30 100.0 35 .............................. TCTTCAGCTCTATATGGAGTTGCACATGACATTCC 24843 30 100.0 35 .............................. AACCTTTCGCATTCAAGACAACTTCTACAGTAGAT 24908 30 100.0 35 .............................. AAATTGTCAGAAAACCGCCCTCCCATCGAAATCCG 24973 30 100.0 36 .............................. GCTCCACCGACAAGCTGCGCTTCGGCGTTTCCTGTT 25039 30 100.0 35 .............................. TCCTCCCATACGTCACCCGTGTAGTCCTCAACACA 25104 30 100.0 37 .............................. CAACATTTTTTTGTTTATAATTTTAACACTTTTAATA 25171 30 100.0 35 .............................. TCTTTCTTGACCAGCTCTGAATATCTCAAGTCCGC 25236 30 100.0 36 .............................. GCCATCCAACTTCCACACCAAACCGGCAACCCCTTT 25302 30 100.0 35 .............................. CTCAAAGGCGAGATAAGTTGTTTCACAAACTCCGC 25367 30 100.0 36 .............................. TATATGCACCATCTTTTTCATTGAATTTATCTATCA 25433 30 100.0 36 .............................. CGTGAAACCCTTGCGAGGGGTGTGGAACAAACAAGT 25499 30 100.0 36 .............................. CGTAAGGGATGAAACCTGCATACTTAGAGAGCGAAA 25565 30 100.0 36 .............................. CCACCTTGATCCGCATCGTCCCTGCAGAATTGGTAA 25631 30 100.0 36 .............................. GATGGCCGTCGTAGGTGCTATCAAGCGCCTGTTACC 25697 30 100.0 36 .............................. AATGAGAAAATTCATTCTTCTGCTGATTGCCATGCT 25763 30 100.0 34 .............................. GGTCAAATTTTTACATTGACCTCTGTACCGGCCT 25827 30 100.0 36 .............................. CCCAAATAGAAACTCTCTTGGTTCTCTCAGTTCCAG 25893 30 100.0 37 .............................. AGTCTTTCTTACACGTTTCAATAGAGAGCAATACAAA 25960 30 100.0 36 .............................. AACTATCCGGATCCCTATATCCATTATTAAGAAGAG 26026 30 100.0 36 .............................. ACAGGAGGGTGGAAAGCCCTTTGATAAAGTAATCAT 26092 30 100.0 35 .............................. AGCAGATATGGAGTGAGAAAGTTTATAATCTTTCC 26157 30 100.0 35 .............................. AACACTAGCAAAAACTAATTGAGCTATTCTATCTC 26222 30 100.0 36 .............................. TGATGGAATTCCTCCAATAGAAGAGGATGAGAAAAT 26288 30 100.0 36 .............................. TCTTTTAACGATATCAAGACTTTTCAGAGAATTAGA 26354 30 100.0 36 .............................. TCCCAACTTATTATCATGATCGAAGAAATCTATGTA 26420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 81 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTACCCTGCTTTGCAGCTCCACAAAGCGATTATAAGAGACAAGATGTGGGAACTCGGATCGACAAGAATGGGTAATGTATTGAAGATAAAAAGCTTTCAAATCTCGGTATCTTGACAGATGAAACAGGATCAGGATGGTCATGACCTCACTGTCCGACATCTTAAACTTTCTATTCCTGCGTTTTTTGTCTGCCTCTTCGAGGGTCTTTTTCTTGATTGTTTCATCAAAAAGCTTGGAGAAATCATCTATGATGCAAAAAACATCAACTATATTTGTCTTCATAAAGTAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //