Array 1 5498-3337 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTA01000047.1 Streptomyces chromofuscus strain JCM 4354 sequence47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5497 37 100.0 35 ..................................... CCGATCGAGGACGCCGCCCGCGAGATCGAACGCAT 5425 37 100.0 36 ..................................... GCGAACTCGAGGACCGCGAGGTCAGCCAGTACGAGA 5352 37 100.0 36 ..................................... GCCGTGTTCGAGCCGTCCGAGCCCGGCACCTACCTG 5279 37 100.0 38 ..................................... CACGCCTGGTAGAGGTTGCTGATCTGCGTGCCGTCGAG 5204 37 100.0 37 ..................................... GGCTCTACCTGCACGTTCTTGAGCTTGGTTCGGGCGA 5130 37 100.0 35 ..................................... GGGCCCGGCACGGCGAGCGGTCCAATTGGGCCTTC 5058 37 97.3 37 ............................A........ CTCCAAGGGGTGAGGGTGAACCGCCGGCGGTCGCCGG 4984 37 100.0 36 ..................................... TTGGGAAGGGAAGGGGCACCCGTATGGGTGGACACC 4911 37 100.0 36 ..................................... ACGGTGTCCGCGCGCACCGTGACGCGGTGCGAGGTA 4838 37 100.0 40 ..................................... ACCATCTCGGCGTTGCGTATCGGTCCGGCTCTCCTGCCGA 4761 37 100.0 35 ..................................... GAGTACAAGGGCGTCACCTACGAGTGCACCCCGGA 4689 37 100.0 34 ..................................... ACCACCAGTGGTAAATCTGAGGCGACAGCGGGTA 4618 37 100.0 38 ..................................... GCGATGAGCTACCGCGAGGAGCGCCGCGCCGACCAGGC 4543 37 100.0 37 ..................................... GAAGTGGGGGACGATGAACGTCATCCGGGTGCCGGGT 4469 37 100.0 35 ..................................... GACTGCACCGTCAGCAAGGTCGAGTACGTCGCCGA 4397 37 100.0 36 ..................................... TCGATGTCGTCGGCGAACAGCTCGAGCGGTGTGCGA 4324 37 100.0 36 ..................................... TCCCCGATGCGGATGCCCTGGTGATCCGCACTGCCG 4251 37 100.0 37 ..................................... CTCGCCTTCGCGCGGACCGACGCGACGCCGCAGGACG 4177 37 100.0 36 ..................................... CAGACCCCCAAGGTCATGCCGCTGAGTGAGTCGCCG 4104 37 100.0 35 ..................................... ACGTGCCTGCCCTACGACCCGTACAGCGTGGGCGA 4032 37 97.3 36 ...................A................. GGACTCCGCGGCGTGGGCGGTGACGTAGCGGACGAT A [4012] 3958 37 89.2 35 ...A.....AC................A......... TCCGCGTTGGACAGCGAGGTATGCCGGGACTGGAT 3886 37 94.6 37 .........AC.......................... TCGCCGGGCTGGAGGGTGGGCCACGTCGACCCGGCGT 3812 37 94.6 35 .........AC.......................... ACCCTCAACCCGAACGCGCCCGCGGTCGGGCACGG 3740 37 94.6 36 .........AC.......................... GCTCGACCAGCTGGGGCACCCGCGGCGCGTCCTCGG 3667 37 91.9 37 .........AC.........G................ GACGGAACCGCGGGCGACAGCATCTTCATCGCCGGCA 3593 37 94.6 35 .........AC.......................... ACGCGGACGGTGGCCAACGGGTGGGGCACCGCCGA 3521 37 91.9 36 .........AC.........................T GTCGACCCCAGCGTCCTCGACAACGTCCAACAGGGC 3448 37 83.8 38 ..........C...TT......G..A.C......... CTCGAACGCCTGGCCGATTTCCCGCGCGCAGATCTGGG 3373 37 86.5 0 ......A.T.C......A.................C. | ========== ====== ====== ====== ===================================== ======================================== ================== 30 37 97.2 36 CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TGCCCCCGCGCGCCTCGACCGCTCTGAGCCTGTCCTGCCACGCGCACGCCCCCTTGCCCACGTCGTGCACCAAGGCCAGATACTCCGCCAACTCGCCGGCCCCGAAAACCTCCCCGAAGCGCCCCGCCAACGCAGCCGAGCCACGCAAATGGTCCTCCAGCGTGTGCCGCACCCCCGAGACACCACTCAGGCTGTGCGCATACAACGCGTCCCCCACAACTGCCACTACCTCTGCCTCCCCCTCCGCACCGGCACCCTCCGCACTGCACCGCACCGAGGCCAAGACCGTAGCCGCCCTGTCCGACATCAGCCGGCCAGAGCGCCGAACCAGTAGGCTGCAATTTCCGTGACCCGTTCCGTGAGCGCCTTGCTTCGAAACCTCAAGTGAACACACGACACGCGGATCGCACCGAAGCCGCATGCCCGTATTCAGCGACTTTGCCCCTCGCTGCCTGCCCACACGGCAGCGAGCGATACGCTGTTTCCGCTGCTCAAGCAGC # Right flank : GTGAATCTCGCGTGGCGGCGCGTCCTCCCCGCCGACGCGGGGGTGAGCCGTAGATCCTCGCACGCGGTCCCCTCGAAATGGTGACCTTTCCGCGGGAGCGGAGGTGAGCCAGGTGGTGTACCGGACGGTGCGGGCGGTGGTGCGTCTTCTCGCGCGCCCGAGGCCAGCGAACCCCGTTCAGACAGGCACCAACGGTCACGTGCCAACCCACGGAGTCCCACGGAGCCAATGCCTTTCCCTTTGCTGGCATGCAGTCTGCTTCAGCTCGTCAGCTACAGGTCGAACGCGACGTGCTCGATGTCGGTGAGCTCGACGTCGAGGCCGTGGGCGCGGCGGCCGCTGTCGCGGAAGTAGACCTCGCCGAGTGCTTCAGCGGCGAGGGTGCGCAGCTGCTGCTCGCTCGCGCCGGCGTCCTGCGCGTTAAACAGGCGGGCCGCGTGCTGCGGGGGCAGGGCCACGGTGAGGTGGCGGATGCGGGCGTCGTCGGTGGTGCCGGGCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14452-15809 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTA01000047.1 Streptomyces chromofuscus strain JCM 4354 sequence47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 14452 37 100.0 37 ..................................... TTCGACAGCCGCCTGCGCATCCCCTTCTCCCACGTGA 14526 37 100.0 35 ..................................... CCCCAGTCGGGCGCGATGACGCCGTCGTTGAAGTT 14598 37 100.0 37 ..................................... CTCGCCTGCGACGACCTGCCGGCCGTGGCCTGGACGA 14672 37 100.0 39 ..................................... GTCCGGGACTACGCCGCGCAGTGGCAACACCCCCTGGAC 14748 37 100.0 36 ..................................... GCCGAGGCGTGCGTCGGTGTCGTCATGGCGTTGGTG 14821 37 100.0 39 ..................................... ACCACATGGGCCAGCGGCGCCGAAGTGTGGCTCGCCCGC 14897 37 100.0 38 ..................................... GACTTCTCCGACCCGCAGCTCGACACCGCTGCCCGCGA 14972 37 100.0 36 ..................................... TCCCTTGCGCACGGTTGAAGTGAGCCGGGGCGCGGT 15045 37 100.0 37 ..................................... ACTCAGGCCGGCGTCACCACCGTCGGCGGGATAGGCC 15119 37 100.0 35 ..................................... AACTTGAGGCTGTCCTCGGTGAACAGGCCGACCGT 15191 37 100.0 35 ..................................... TGGTTGATCCGCGCGTAGTACGTGTCGTCGACGGC 15263 37 94.6 35 ..............TT..................... CCTGCTGAAGTGCAGACCGTCACCCTGACCGGACA 15335 37 97.3 35 ................A.................... GTCGACCTCGGCGACGGACACGTACATGTCCTCGA 15407 37 100.0 35 ..................................... TGTTGTATGTCCGGGCGTGGACACGATAACGGGGC 15479 37 97.3 36 ..A.................................. CAGCTCGTACCAGCCGGCCATGGTGCAGGTCCACCG 15552 37 97.3 36 ..................A.................. CACGAGCCCGTGTACCAGGACGGACAGCCCTACGCC 15625 37 100.0 36 ..................................... ACCTCCACGACCCGGCTCACCGGCGAGGGCAGGCGG 15698 37 97.3 37 ...........T......................... GTCATGGCGACGCTGGCCGAGCTGGCGGAGCACGGCA G [15703] 15773 37 97.3 0 ..................................C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.0 36 CTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCTCCCCTGGATGGCCGCCTGATGGACCTGCTGCTCACCTACGACGTCGACACCACCAGCCCAGCCGGCCAACGCCGTCTTCGCCGCGTCGCGAAACTCTGTGAAGGCCACGGCCTGCGGGTCCAGAAATCCGTCTTCGAGGTCGTCGCCGACGAGAAAACGCTCCTCAAACTCCTCCATGACCTCGACCAGATCATCGATTCGGACACCGACAGTATCCGGCTGTACCGGTTGCAGGCCGACGGCTTCAACGACGTCCAGACCCTCGGCACCGCACAGATCCAGCCCCACCGTGAAGACCTCGTACTCTGACGAGCATGATGTCCGCTACACGGCCGACGGGCGGATGCGAGTTCCTCCCGCACACCCACTTCGGAACCGGAAGTACACACGCGACACACAGATCGCACCGAAGTTGAATGTCCGTATTCAGTGGTTCCGTCACCCGCTGCCCGCCCACACCACAGCGAGCGATAAGCTGTTTCCACTGCTCGGGCAGC # Right flank : CCCGCATTATCGCCCGCGTCGAGACCGACTTCCGCGATGCCGGATACCGCGTTCTCACCGTGCGTCACGAACACGACGCGAAACGCTTTTTCATCGACCACGGCTACACCTGTCGGCGACGGCTGAGAAGTGGACCAGCGGCGGACGCTTGGGTTCTAACGCTTGTCGCAACATTCCTTGATCATTGTGGAGTGTTGATGGCGAGGCGGGGACGCAAGCGCAGACTGGAGCTCGAGGCCGAGTACTGGCGCCTTCTGGCGTCCGGGGTGGGCAGCGTCGAGGCATGCAGGCAACTCGGGATCGGGCGTAAGACGGGCTACCGGTGGCGGAGGGAGAACGGTGGTTTGCAACCGGACTACTGACTTCGGCTGGTCAAGGTGACGTGGGTTCGTCGAGGTTCAGGCCGGTGCCGACTATGAAGCCGTCGAGGGTGCCGGGCCGGTACTGAAGGCGCTTGAGCCGGTTACGGACGAGGGCTTCGAGCCGGTCGAGCGCGACCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //