Array 1 377-1402 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZE01000072.1 Neisseria meningitidis strain MRSN431219 MRSN431219_contig00072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 377 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 443 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 509 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 575 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 641 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 707 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 773 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 839 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 905 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 971 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1037 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1103 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1169 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1235 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1301 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1367 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : CATCAAATCATCCGCCGCGATTCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 2-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZE01000073.1 Neisseria meningitidis strain MRSN431219 MRSN431219_contig00073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 68 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 134 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 200 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 266 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 332 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 398 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 464 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 530 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //