Array 1 5782327-5783609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069353.1 Saccharopolyspora erythraea strain NRRL 23338 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5782327 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5782400 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 5782473 36 100.0 37 .................................... CAGGCGTTCGGCGGAGAGCAGGCCCGGGAGTTCGGGC 5782546 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5782619 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5782693 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5782765 36 100.0 41 .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 5782842 36 100.0 35 .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 5782913 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5782985 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 5783058 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 5783132 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 5783204 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 5783276 36 100.0 37 .................................... ATCGGGTGTGCGTGCTTGCTGATTGGTGCCGGTACGA 5783349 36 97.2 36 ..................C................. CCTACTACAACACCGGCAACGTCAGCTCGTTCTCGA 5783421 36 100.0 41 .................................... GTCGCGGGCGAAGTCGTGGCTCCGGTGAATCTCCATCTCAG 5783498 36 97.2 41 ...................C................ CCACATCGAGAGATCCCCTACTACAGCGTGTAGCCCGGCAG 5783575 35 88.9 0 ......T.................-..T.C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.8 37 CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Left flank : AAGGTCTGCCAAGAACACGGTGCCCGGACGCTGCTCAGCCTCCGCACATGGTCGACCACAATCCCGGAGACCAGGGAGGCTTTCACCGCCGTCGTCGAACAAGCCTGCCGCGAGTGGCGCAAGCACACGGAAACGACGGGGGCGCAACGACATCGACTCATCTTTCTCAGCGGCCCCATCCCAATCGCCGTCGCACTCGGCGCTCGATTCGCCCCCGAACGGGGCCGCTGGACCGCCTTCACCTTCGACCGAGACACGAGCCGGTACGTACCCTTCCCAACCCGGGATTGACCTGCAGCAGCCTCTACTCGGATGGCCCCACACGCGAGCGGCCCAGCGACGCCACCACCAGGCGGGGGCACTCGCGGCGAATCACCGCAGGTCAGAAGCGAGAGGCAGGCATGTAAGATCCACATCGGTGGACGCTAAGATCGACACCGAGCACCCGCTCGAAACGATCTTTGAAAAGCCAGGACACGGGCACCGAAAACAAGGAGCCC # Right flank : CTGCGCATAACCACGATGCGCCGTGATGAGCATCCAGTTGCCACCACGAGCGTTCCGGGCCGATCCTCCGCTTTCCGCAGCCGGGTGCTCCATACTTGCGTTCCTTACGATCACGCTGCCACGGGATCTTCAGGTACGTCGCTGTCTTGGCCTCTCATGTTGGCCTCTGCATCAGCCAATGGCTATTGCTGGCTTTCCAGCCGCCCGTCGCGGCTGCTCCGGTGAAAAGCTCACCGGAGGGGGTGGGTCTGATGTGGCCGCTTGCAATCCACTATCGAGTGAATCCCGAGATTCGGTGTGCGGGTGCATCATCCCTGGGTGTCACAGCCTGGCACATACCTACCTACAGGAGATGATCTCCCATGGATCCGCCATTGCCCATCGGCGCCCGCGCGCTCAGCGACTTCCGGTTTTGTCCGCGGCTGTTCCACTTGGAGCACGCGGAGGGCTACCGCTTCGACAGCGAGGAGATGCGCCTCGGACGTCACGTCCATGCCTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 5788701-5789802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069353.1 Saccharopolyspora erythraea strain NRRL 23338 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 5788701 36 100.0 34 .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 5788771 36 100.0 35 .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 5788842 36 100.0 35 .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 5788913 36 100.0 37 .................................... CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTCAG 5788986 36 100.0 51 .................................... ACGGAGTAGAACGGCACCCCGGGCACCCCGGGGTTGAAGTAGTACTCCGCC 5789073 36 100.0 39 .................................... ACCAAGCCAAGCTTGTCGCCGAGCACACCACGCACGAAG 5789148 36 100.0 59 .................................... TCCTGGGCCTGCTTGGTGAACCACAACGGCCTGCTCGGTGAACCACAACGGCAGCACAG 5789243 36 100.0 43 .................................... CAAGAACGCCTCGGAGATGATCCGCGAGTGCGGCTTGATCCGG 5789322 36 100.0 38 .................................... CTGCCACCAGTAGCGCAGCAGGGGGAACGCCAGCTCCA 5789396 36 100.0 37 .................................... TTTCCGAGGCGAAGGTTTCTGGTGTTCGCCATGTCGC 5789469 36 100.0 40 .................................... AACTCGGTGTCATAGAAGTACTTCATCGTTTGAGTTCTTG 5789545 36 100.0 37 .................................... TGTCCTGCGCCTCGTCCAACAGGATCACGTCGTACGG 5789618 36 100.0 42 .................................... CACGTGCCAGTGCGGGTCACCGATCGGCGCGTCGCCGACCGG 5789696 36 97.2 35 .........................G.......... CTCGGAAGGTTGGCCATGCGTGGTCCGGGCAGGGA 5789767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================== ================== 15 36 99.8 40 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CGGCGCCGCGCCGGAGACGCTCGGCGCGCACCACTACGACCTGCTCGGCATCGACGATCCGCGACTGCACAATGTCAACGTCCTCGACCAAGACGAGGCAGTATCAACCGAAGAACTAACGGAGGCCCAAACCCTCTGCGAGAAGCTGCATATCCCAACCGCATTCGCGGCACGCGTGGCGATCGGAATCCGCGGGCGAGGAACCTGACTCCACCCCGAACAGCGACTTCGCCCCCACGACACAGCCCGCGGCGACCGCAGCAGTCACAAAGGATCGCTGTAGTCACGGCAGTCACAACATGCAGCTCGGACCACCGGATCGTCCGCGAGCGGTCCGGCCACGACACCGCCAGGCAGAGGCGCTCGCAACGGGTTACCCCTGGTCAGAAGCGAGAAACAGGCATGTAAGATTGACATCGGCGACCGCCGAGATCGCTACCGAGCATCCACTCGAAACGATCTTTGAAAACGCAGGACACGAGCACCAACAACAGGGAGCC # Right flank : CACGTCCACGCCGAGGTAGTCGGTGCCGAGGCGATCGTCGGTGCTGTCACCGGCGCCAAGCTGTCAACGGCGGCCGAATGTGGACCCGGCTGCGGCGGCTGAAAATGGACCCACCCTGGTTGTTGATGTTTAGTCGTTGGTGTTGGTGGCCGCGGGCACGCGGCCGAGGTCTTGGCGGTCTTTGAGGCGGTAGCTGTCTCCTTTCAGTGAGATGACTTCGGCGTGGTGCACGAGGCGGTCGATCATGGCGGCGGCGACGACGTCGTCGCCGAAGACCTCGCCCCAGCGGCCGAAGGGTTTGTTGCTGGTGACGATCAGGCTGGCTCTCTCGTAGCGGGCGGAGACCAGCTGGAAGAACAGGTTCGCGGCTTCGGCTTCGAACGGGATGTAGCCGACCTCGTCGATGATCAGTAGCGGGATCCGGCCGAGTTTGACCAGTTCCTGCTGGAGTCGTCCGGCGTGGCTGGCCTCGGCGAGCCGGGCTACCCACCCGGCGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5792034-5792507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069353.1 Saccharopolyspora erythraea strain NRRL 23338 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 5792034 36 72.2 38 .CCGTC.GC.ACA....................... ACCATGCCCGGGTGCGCATCCGCACGGCCGCCGACCTT 5792108 36 100.0 42 .................................... GCCTTCACCTTTGCCGGCATCCGGCCGGAGTTGTTCAGCCGG 5792186 36 100.0 35 .................................... CCAAAACCCTGCGTCGTGCATCAACCAGTACCCGG 5792257 36 94.4 37 .......A...........C................ ATCACGATGGCGGTAGAGCTGTCGGTGTAGTCGGCGA 5792330 36 94.4 35 ..............C........C............ AACCAGAGGGAGAGGGCTATGGGCAGCGGCCACAT 5792401 36 91.7 35 ....A.....G...C..................... TGGTCACGGAACTGGCCCGCACCGAACTCGCCGCA G [5792422] 5792473 35 75.0 0 A..GG.T..A.A..TG..........-......... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 89.7 37 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CCCGACACCATCACCAGCACCGGCGGCCGCCCCACCTGCCCGAACCCCAGCGGGATATCGACCGGCGGGAACCACAGGTCGCATTGGGCCAGCTCACCGGGCTGATACACCGTCCGCGACACCGGATCCGGCGGCAGGAACAACGGGCGCAACTCCCGCACCCGGTCCTTGAGCACCGTCAGGCCCCGCTGCCAGCCGATCCTCTCGGCGATCACCGGCACCGGCATCGTCGGCCACTCCGCCAGCAACGCCCGGATCTGCGGCTCCACCGCATCCACGACCGAGCCCTTCGACGGCCGCTGATACCGCGGCGGCCCCTCCGAAGCCAACGCCCGCCGCACCGTGTTCCGCCCGACACCCAGCTTCCGGACGATCGCCCGAATCGGCATGCCCTCACACCGATGCAACCGACGGATCTCTGCCCAGTCCTCCACGCTGATCACTCCCTACTTGTCAGGGAGTGGGTCCGATTTCGCCCGCCCACACCGGGTCAGGATTCA # Right flank : CGAGATAGTGTTTCCCAGCGGTACCGCGATCCGGCGCTGGTACGTCACCGTGCCCAGCGACGCTCCTCATTTCTCGCGGTAGCCGTCCGAGTTCAGCTATGGGTCGGCAGGAACAGGCCCATTCCAAGATATCTCTGTGATCCCAACAGAACCGGTCCTGTTGCTGGCTCGGCAAACGTGATTTTCGCGTGGGTGTACGGGCGGTTGTCTCGGCGGGGTAGTTGCGATCGGCCGAGGTCGGCGGCTCCGTGGACGAACGGGTTCCGGCTCGTAGTCACTTCGATCGGACTGGGGAGTCCACTTCGGATGCATGTGCGGGCGATCTCCGCCGCTTCCCTGCCCTTACCCGGGTAGCGATCCAGCACCATCGGCGTCACCGTCGTCCAGCTTCGGGACGGACCCGACAACCCAGCCGTGACGGGCTCGGCATCCTGGGGCCGCAGTCGCAGCCGTACACCCGGCAAGTCCAGATGAAGTGGTTTTCCCGTTGTCAGCGCCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //