Array 1 803250-805592 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483339.1 Streptococcus thermophilus strain NCTC12958 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 803250 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 803316 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 803382 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 803448 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 803514 36 100.0 30 .................................... TCTTTGTGATATAAATGAAAAAAAAGACTA 803580 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 803646 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 803711 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 803777 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 803843 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 803909 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 803975 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 804041 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 804107 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 804173 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 804238 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 804304 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 804370 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 804436 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 804502 36 100.0 31 .................................... CTTTCAAGATACTCATCAACCATTGATGTCA 804569 36 100.0 30 .................................... AAAAGGTGCGTATGAAACTCATCCCAGCGG 804635 36 100.0 30 .................................... CTATGTCTTTACTGTTCTTCCAAAACCACC 804701 36 100.0 30 .................................... TTTGTTTGCGTTCACTTAGTTTATACTGAG 804767 36 100.0 30 .................................... AATTTGTCATTGACATTTACCACCGTCCTG 804833 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 804898 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 804964 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 805030 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 805096 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 805162 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 805227 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 805293 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 805359 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 805425 36 100.0 30 .................................... TCATACTAAAACTGGATAAACAATATTACA 805491 36 100.0 30 .................................... TGACACGGCTGGCAGTGTTTCGGTTGGTGG 805557 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGCCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1569572-1568082 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483339.1 Streptococcus thermophilus strain NCTC12958 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1569571 36 100.0 30 .................................... AATACGTGAGTTTGGCACTCTTGACGTGGC 1569505 36 100.0 30 .................................... CACAGTTGAGATACCGAATCCGAATAGCAT 1569439 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 1569373 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 1569307 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1569241 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 1569175 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 1569109 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 1569043 36 100.0 30 .................................... GCCAAACAAAAACAGAAATGATGAAGCGGA 1568977 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1568911 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 1568845 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 1568779 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 1568713 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 1568647 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 1568581 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 1568513 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 1568447 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1568381 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 1568315 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 1568249 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 1568183 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 1568117 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //