Array 1 91572-92746 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIK01000016.1 Escherichia coli strain SI-P024 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91572 28 100.0 33 ............................ ATTACCCAGGAAGAGCCGAAATATGGCGATAAC 91633 28 100.0 32 ............................ ACGGCGCACCCGTAAATACACAACAGATAAAA 91693 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 91754 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 91815 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 91875 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 91935 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 91995 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 92055 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 92115 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 92175 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 92235 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 92295 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 92355 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 92415 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 92477 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 92537 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 92597 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 92657 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 92717 28 85.7 0 ....................A...C.CT | T,C [92737,92741] ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101805-102593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIK01000016.1 Escherichia coli strain SI-P024 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 101805 28 100.0 32 ............................ TGAATAACCCGGACAGTCTGACGGAAGTGGCA 101865 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 101925 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 101985 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 102045 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 102105 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 102165 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 102225 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 102286 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 102347 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 102407 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 102467 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 102566 27 85.7 0 ...G...A...............-C... | T [102586] ========== ====== ====== ====== ============================ ======================================================================= ================== 13 28 98.9 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //