Array 1 11349-8379 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQJ01000028.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1563d x_contig000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11348 30 100.0 35 .............................. GTAGCAACTCTGGAACGTTCATCATTTCAAGTAGC 11283 30 100.0 34 .............................. CACAAACTTATCTAAAATAAAATCATTCGAGGGA 11219 30 100.0 37 .............................. AAATTCGGTTGTGTTTTTGGTCCTACAAATACTCCTA 11152 30 100.0 37 .............................. CAAATTCCGCTACGCTCATTCCTTTTTTGATGAAATG 11085 30 100.0 35 .............................. GGCGTTTTAGCTGGTAGCAGTGCGACCCTTACTTT 11020 30 100.0 33 .............................. TTTGGCAAAAATATCATCAAATCAGGAAAACCT 10957 30 100.0 35 .............................. TACTAACCCCTACACTTCTTGGGGGGGGGTACGAG 10892 30 100.0 35 .............................. ATAGTAATATCGACGGCTTTAAGGCAGGGTTGGAA 10827 30 100.0 36 .............................. AACATGGATGGAGTGCTGCAAAACAAAAAAATATCA 10761 30 100.0 34 .............................. GATATACAAAATCCGCGACATATTTAATAGCCCT 10697 30 100.0 34 .............................. ATAAATTTGGTGGCTATCAATACAGAAGTTGCGA 10633 30 100.0 35 .............................. TATTCAATATGACCTTTAGCTATGTAGTTTTTACT 10568 30 100.0 35 .............................. TATTCAATATGACCTTTAGCTATGTAGTTTTTACT 10503 30 100.0 35 .............................. AAAATGTTGCCGTCGTGCTTCCGCTAGCAGGTATC 10438 30 100.0 36 .............................. CGCTAACTCCTCTTTCTGAAACGCTTGGAATACCTA 10372 30 100.0 39 .............................. TATTTAAAATAGTTTTCGGGTTGTTGCATACTTTGGATT 10303 30 100.0 34 .............................. ACTAGGCTTTGTTTGCTTGGTGGCGTGTATGTAG 10239 30 100.0 36 .............................. TGTTTGCTATTTCCTCCTTTTGGTCATAAGAGTAGC 10173 30 100.0 36 .............................. GTAAATTAAAAGAGTTAAATAAAGAGCTTAATATTG 10107 30 100.0 34 .............................. CCACTGCTGAGAGATACTCAGGGCTATTTGGTGG 10043 30 100.0 36 .............................. ATAGGGGATAATAAATGAGCCAAAGAGAAGAGTTTA 9977 30 100.0 35 .............................. AAGAAGCTTTAAAAAGGCAGGTGAATACCATAGAG 9912 30 100.0 35 .............................. TTTTAGGCAAAACGCCTACAACTGAGCAGATAGAC 9847 30 100.0 34 .............................. TTTTTCAAATACCCTTAAAAAGGATATTTGAAAG 9783 30 100.0 36 .............................. TATTTTGTGTTTGATAGAGAGCTAAAAAATGATAGA 9717 30 100.0 34 .............................. AACGGAATAATTGGGCAATTTCACAAGCGCAAAA 9653 30 100.0 34 .............................. TTTATGGTATAATCTACCCATAAAATGCCGTTTC 9589 30 100.0 35 .............................. AAAAACAAGAAGTTGTGAAATATATGAAGCTTAAA 9524 30 100.0 35 .............................. GATTCTGTTGTAAATAATGTTCAAGGCTCTTTTGG 9459 30 100.0 36 .............................. CACTATCAAAATAAAGAGAGACAATCTCAAATAAAA 9393 30 100.0 36 .............................. TTTTCGTAATGGCTATTTATCTCATTTTTGCCATCT 9327 30 100.0 36 .............................. GTTGAGCCTCTACCTCTTTCCTGCCTTGTTGTAAAA 9261 30 100.0 35 .............................. TCATAGTATATTGATACCGCATAAGTGGATCTATC 9196 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 9132 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 9066 30 100.0 34 .............................. TAGCGTAAATGTCGAAGTTATAAACGAGTGCTTA 9002 30 100.0 35 .............................. TACCTTTGGCGGTGGCTATGGGATAAGCCCTATTG 8937 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 8871 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 8805 30 100.0 37 .............................. TGCTTGAAACAATGCCTGGTAACCAATTTTGCAAGAA 8738 30 100.0 35 .............................. AGTTCATCCCCATCCTTTTTCTCTAAATATTTGTC 8673 30 100.0 36 .............................. AGTAAAGGAAAGTTAAGAAATGATAGGCAATTTACT 8607 30 100.0 36 .............................. AAGGCTTTAGAAGACGCAAGGGCTAAACGTGAAGAA 8541 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 8475 30 100.0 37 .............................. CAAAGCTCATTTGCTCTTGCTCTTCTTTTGGCACAAG 8408 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.9 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : TTTTGTGATTTGCATTTTTTATCGCTGTTGTAGCTGTTTTGATATTTTTATCCAAAACATCGCTTAGGGTAGTGGCTGTTTTGTTGATCTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAAAAAAGGCTTGTAAATGTTTAGTTTTATTATTATGGTTTTGGTTTTTGCTTTAATAAAATTTTATTGTCATTTTGATTTTAGCTACTCAAAGCCTTACACTGGTAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAATTCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATAGAAAATTCACATTTTTAGGATTTGTAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGCTCACAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //