Array 1 2487-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQC010000002.1 Clostridium perfringens strain CHD9216R CHD9216R_seq2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 2486 29 100.0 36 ............................. TTGAACACAAAAGAAGAAATTGAAGCATGGTTAAAC 2421 29 100.0 36 ............................. TGTTGTGAATATCTTGCAGTAGGGAAGAATAGCCTT 2356 29 100.0 36 ............................. TATTTGCGGGTCAATTAGTCTATCAAACTGACTTAT 2291 29 100.0 37 ............................. CTCATCCACTTAACCAAATAAGCCAAACCAACCTGAC 2225 29 100.0 36 ............................. AATGAATGGAGAACTGTATAATTCCCTTCCAATTCC 2160 29 100.0 36 ............................. TTTTATTTGAGTTATTAATGTTTGATGAAGATATTT 2095 29 100.0 36 ............................. ATTGTTTGTGAAGATTATATAGATATGAGTGATTTA 2030 29 100.0 36 ............................. ACATTTGAAGAATTAGAAAATGATTTAGATGCAGCT 1965 29 100.0 36 ............................. AGCTCTGTACATACGAGAATTATAATAGCCTGTGTT 1900 29 100.0 36 ............................. AAAGAAAAAGTAGTTTTAGAAATGCTTAGAAGGTTC 1835 29 100.0 36 ............................. TTAACTGTTATTTTCTCATTTTCAAAAGATTCTATA 1770 29 100.0 37 ............................. ATTGTTTAAATATAGATGATGGAGATTATCCAGTATT 1704 29 100.0 37 ............................. ATTAGAATCTGGGAAGATATAGATGCAAAAGGCAGGA 1638 29 100.0 73 ............................. TCATAAGACAACCAAATTTCATATGAGGAATGTAAATCTGTGTGGAGCACCACTAGGATAATGTCCAAAGAGT 1536 29 100.0 37 ............................. AAGAAATTAGACAAACAATACATATTTAGATTTATAT 1470 29 100.0 37 ............................. TTATATTATCAGTTATCTCTTGTATTTCATTCTCATC 1404 29 100.0 37 ............................. CGCAAAAAATATTCTTTCATACAGACAGATGATATAA 1338 29 100.0 36 ............................. ACTACAATAGTTTATCAACTCGCAGAACCAACTGTA 1273 29 100.0 37 ............................. TGGAGGTGGATTAGTCACTATTTACGCTCACAATTCA 1207 29 100.0 37 ............................. ATCATATAAAATCCCATGCTTCTCATAATATCGTTTA 1141 29 100.0 36 ............................. TTCTTAATTAGTCTTATTATTTCTTCAACATCAGCG 1076 29 100.0 37 ............................. GTTAAAATCATAAATTAAACTCCCTTTAAATTCTACG 1010 29 100.0 36 ............................. CATGAACACTATCAAAGCTAGTTGTAACATTAGAAT 945 29 100.0 38 ............................. ATATTAACCATGTGAAAAACTTTTTCATCAACTTCTCG 878 29 100.0 36 ............................. TGAATCTATTTAGAGAATCAGTTAATGAATTTAAAA 813 29 100.0 36 ............................. AAAGTTAAGGGTAACGATCATGGCATATGGAGAAGA 748 29 100.0 36 ............................. GAGTTAGCAGAGATTTTAAGTGTAATTTTAAAAAGA 683 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 618 29 89.7 37 A......C...........A......... ATCATATAAAATCCCATGCTTCTCATAATATCGTTTA 552 29 100.0 36 ............................. TTCTTAATTAGTCTTATTATTTCTTCAACATCAGCG 487 29 100.0 37 ............................. GTTAAAATCATAAATTAAACTCCCTTTAAATTCTACG 421 29 100.0 36 ............................. CATGAACACTATCAAAGCTAGTTGTAACATTAGAAT 356 29 100.0 38 ............................. ATATTAACCATGTGAAAAACTTTTTCATCAACTTCTCG 289 29 100.0 36 ............................. TGAATCTATTTAGAGAATCAGTTAATGAATTTAAAA 224 29 100.0 36 ............................. AAAGTTAAGGGTAACGATCATGGCATATGGAGAAGA 159 29 100.0 36 ............................. GAGTTAGCAGAGATTTTAAGTGTAATTTTAAAAAGA 94 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 29 29 89.7 0 A......C...........A......... | ========== ====== ====== ====== ============================= ========================================================================= ================== 38 29 99.3 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : T # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //