Array 1 329433-328025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNNO01000014.1 Vibrio parahaemolyticus strain B6_5 B6_5_contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 329432 28 100.0 31 ............................ ATATACCAGTCATTAGACACAGCCTGTGCGA 329373 28 100.0 32 ............................ TAGTGAACAGGGTGTTATGGCTCGTGATAAGA 329313 28 100.0 32 ............................ TATCGTAGTCGGCACTTTCTATAACCTCTTCA 329253 28 100.0 32 ............................ AACAACGTTTTCATTGCGTCTGCCATCCCCAT 329193 28 100.0 32 ............................ AACAACGTTTTCATTGCGTCTGCCATCCCCAT 329133 28 100.0 32 ............................ AAGTGGTGTGACACTTGCTATTACCAAAATGA 329073 28 100.0 32 ............................ GAATCAGACTCATCAGAGGCAGGTGCCTTTTC 329013 28 100.0 32 ............................ TATGAAACACTAGGCGGCGCTAATGAAGTTGT 328953 28 100.0 32 ............................ GCAAAGCCTTTGCTGAAGAAGCAGCAGATAAA 328893 28 100.0 32 ............................ ATCCAGTACCATTATTACAAACTACGTTTTCT 328833 28 100.0 32 ............................ ATCACGATTGCTTTCTATTGGTTGGCTGACCG 328773 28 100.0 32 ............................ CGTTAACTGTTTCAGATCCAATTTGACCATCT 328713 28 100.0 32 ............................ GTCTTGCGTTTAAGTCCGATGACATCACACTA 328653 28 100.0 32 ............................ ATCCAATCCGTATTTTTTGCGTAACATTTCCA 328593 28 100.0 32 ............................ AGCATATTCGCTCAAATCTGGCATTTGCCTTC 328533 28 100.0 32 ............................ ATCAAATAAAAGCCCGTTTGTATTGAGCCATT 328473 28 100.0 32 ............................ TGACCAATCTCTGGCGAGAATCCAACTTTAAT 328413 28 100.0 33 ............................ GCTATCTTAAACAATGGAGGTGGTTGTTTGATT 328352 28 100.0 32 ............................ AAATAAAGTGGCAGATACCAGCTCAGTTTGCC 328292 28 100.0 32 ............................ GTATGTAAATGGCTGCGCTACAAGACAGATAT 328232 28 100.0 32 ............................ ATAATAAGAAGATCGCAACCTTCTAACGATTT 328172 28 100.0 32 ............................ ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA 328112 28 100.0 32 ............................ AAGAACGCTTAGAACGACGTTTAGACATTTTT 328052 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GGTTGGTACATTGAAGCCAAAG # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATATTATTCTCATAATATTCAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAAAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 181-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNNO01000015.1 Vibrio parahaemolyticus strain B6_5 B6_5_contig015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 180 28 100.0 32 ............................ ATAATCAATATTTGCTTAAGTCGCTTATTGAA 120 28 100.0 32 ............................ TTGGTGCGGGCGCGGTGGGTGTTCCTCTTACC 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : CGAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGACTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTAT # Right flank : AATTCCTAAAGGTATCAACTACGTTGATTTGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //