Array 1 2073121-2071872 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPCA01000001.1 Cronobacter malonaticus strain SD43 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2073120 29 100.0 32 ............................. ATTAGCTGCTTTATGTGGATGCTTCACGTAAT 2073059 29 100.0 32 ............................. CTGTTGGGAGCGCGCGTTTTGTTCTCAGTAAG 2072998 29 100.0 32 ............................. AATCTTGCCCCACATTTGAAAATGCCAGTAGG 2072937 29 100.0 32 ............................. CGTAACAGGTGACACTTATTGATAGTGCTGAA 2072876 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 2072815 29 100.0 32 ............................. TTGGTTAACGCAAACGCAGATCCTGATAACAA 2072754 29 100.0 32 ............................. GCCAAAAATCTGATCCCCTTTTGCTCTAGCCA 2072693 29 100.0 32 ............................. GTAAATGCACCAACCAGGTAATAATATTTGCT 2072632 29 100.0 32 ............................. GGCGCGTTGGCCGAGGGTTTCAGTATTCATAG 2072571 29 100.0 32 ............................. CGCCACGTTTTTTAGCGACCGCAATCCCCTCT 2072510 29 100.0 32 ............................. CAGTGCCTTTGCCTCGGCACTGAGCAGGATTT 2072449 29 100.0 32 ............................. CCGGGGTGGGGAATATTATTTAGCGCGACAAT 2072388 29 100.0 32 ............................. AGGGCGGCGGGCTTGATAATATCGCAGAGGCC 2072327 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 2072266 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 2072205 29 100.0 32 ............................. AGACCGGACTTATCCAGCATCTCGATGAATTC 2072144 29 100.0 32 ............................. ATTTCGATAAATAGAGAAGGGGTGTAATTCAT 2072083 29 100.0 32 ............................. ATAATTTAGCAAGCCGGAGTTCAGCGCCGGCC 2072022 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACAGGCAAATC 2071961 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATCAGGAGAGAAG 2071900 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTTCAGCTTCATCCTGGTGATGAAACATCATAAGTGGCGTATCAACTCGTCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCAGTTATTTACTATAACGTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2101000-2099812 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPCA01000001.1 Cronobacter malonaticus strain SD43 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2100999 29 100.0 32 ............................. CGTTTATTAACCCCGCACCAGTTTTTTAATCT 2100938 29 100.0 32 ............................. CCGCATTAATGTATTTATTGACGAGCTGGAGT 2100877 29 96.6 32 ............................T ACGGCACCATCGTAGGTGGCGATGGTGGGGCC 2100816 29 100.0 32 ............................. GCGGCGATAAATCGTCAGAGCGCGTCGCGTCT 2100755 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 2100694 29 96.6 32 ........T.................... CGACTTATATTCTGAGACTACATTCTCGATAG 2100633 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 2100572 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 2100511 29 96.6 32 ............A................ GCGAAACCCCGGACTGCGCCAACAGTTCCGGG 2100450 29 96.6 32 ............A................ CATCGTTTACGCATGGGTGGATGAGCAGTCGG 2100389 29 96.6 32 ............A................ CTAACCGCTCAGGACGCGCTAAACGCTATCCA 2100328 29 93.1 32 ............A.............A.. CCGCAGGTAACCAGCGGCGATTGGCAAAACTT 2100267 29 93.1 32 .....T......A................ CGAGAGAATTTAAAACCCCCACCACCGACGCA 2100206 29 100.0 32 ............................. TTCGTGTCGGTGCCGTTATCCGGGGTGAAAAC 2100145 29 100.0 32 ............................. GCGTTGTCTTTTGAGTTGAGGACGCCGGGCAC 2100084 29 100.0 32 ............................. CCAAATATTACGCACAATCTTTTTTCGGCCTC 2100023 29 100.0 32 ............................. GTGGTGACAGTTATTCCGAGTCCGTATCCGCC 2099962 29 100.0 32 ............................. TGCGGCGGTCGAGAGGTTGGCGAACGCAGTGT 2099901 29 96.6 32 .C........................... AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 2099840 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //