Array 1 847205-847354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVGN01000003.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig3_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 847205 30 100.0 30 .............................. TAGCCAACCTGTTTGCATTGCTCCGTTGCT 847265 30 96.7 30 ......A....................... CAACCAGCCTGTTTGCATTGCTCCACTATT 847325 30 93.3 0 .........A.....G.............. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Left flank : TTTAACACACGAAGTTCTGGTCGATCTTTTACAAATCTATTTTTAGCACCTGTATTTTTAATTAAAGCATTCTGTACAGCATTTGCTAAAGTAAGTGCTTGTTTACTTTTTGGGTGTTCAGAATTATATAACGTTTCAATTCCTTCTGCTGCAGTCGCATCAGCTGAATTTACATGCACACTAACAAAAATATCTGCTTTGTTTTCATTTGAAATACGAACACGATCTCCTAATGGAATAAAGATATCTGTTGCTCGTGTCATCACAACATTTGAACCACTCTGAGCTAATAAACTCTTTAACTTCAAACCTACTTGCAGGGCAATCGTTTTTTCATATATATTTTCATATAATGTCCCCGAATCATATCCACCATGTCCTGGATCAACTATAATTGTTTTACCAAATATGATTGGATTGTCAATCCAAACACCATTTGTATCAAAATAGTATACTTTACCATTCTCATCTAACCAGCCTATTTTCATTGCCCCATTGCC # Right flank : CAACCAGCCCATTTGCATTGCTCCGCTTCCG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1008-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVGN01000067.1 Bacillus pseudomycoides strain AFS077796 AFS077796_99_C9_Contig67_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1007 29 100.0 36 ............................. AACGATGTAAGCTGCGCTTCAGTTTGTGTTATAAGG 942 29 100.0 35 ............................. GCAGTCCCAGCAGGATACTGTGAGGTGGAAATACC 878 29 100.0 36 ............................. TTAGATATTGCATTGGTTTACGACCCAGAGAAAAAC 813 29 100.0 36 ............................. ATGGCAGCTAAAATCTCAGCAGCTATTGCTCGTAAG 748 29 100.0 36 ............................. CTAAATACTTTGTATACGTATACTCAAAAAGCCACT 683 29 100.0 36 ............................. GTAGCTTTACTAACAAGTGAAACTGATCTAAACTTA 618 29 100.0 37 ............................. AGCACTTACGATTCCATCCTTCTTCGCTTCTGTATAG 552 29 100.0 36 ............................. ACAAAATCTTTGGACAAATCAATTTTGTTTCCTTTT 487 29 100.0 36 ............................. TTAAAAATGTGATTACGTACTTCACAGTTTACAAAC 422 29 100.0 35 ............................. GCTTTAGAAATAGAAAAATTGGTTCAAGCAGGAAA 358 29 100.0 36 ............................. TAAGTTTTCTTCGTTCTCTGATTTCCTTCCACACTT 293 29 100.0 36 ............................. CTCTATTTGGAAGCACGGGCAATCGGTGCAGAGGAA 228 29 100.0 35 ............................. CAGCAACGATCCTTACAGGATGTAAAAAAAACTCG 164 29 100.0 37 ............................. ATAGCGGTAACCACTCCTAAGACAACTATTACAAAGT 98 29 96.6 35 ....................T........ GATTTATCTGTTGCTGTAACTGTTACTTGAATATC 34 29 82.8 0 .................G.TTC......A | CG,G [6,9] ========== ====== ====== ====== ============================= ===================================== ================== 16 29 98.7 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTATTGGAGAAGATGCTTATAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACACAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCTGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTTCTTTTGAGCTTTATTTCGCTAAGTGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGTCAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGGTGAAAATATCAGG # Right flank : AAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //