Array 1 2488244-2487281 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV917378.1 Salipaludibacillus agaradhaerens strain DSM 8721 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2488243 32 100.0 35 ................................ TTTTATTTATGTCCTATACATTATTTATTGGCCAC 2488176 32 100.0 33 ................................ TATAGTCGCTTGTATTTGTGGCATGTTACCCAT 2488111 32 100.0 35 ................................ AGACACACGGGAGGCAATAGCTTGCATTGGGTCGC 2488044 32 100.0 37 ................................ GATCATACAGGTGATGGTAGAGTGTTGGTACGACAGG 2487975 32 100.0 34 ................................ TGTAACGGATTCATCAAACTCACTTAATGGAATT 2487909 32 100.0 33 ................................ AAACAACTCGATTTTTGTTATTGTCTTTTCCCT 2487844 32 100.0 34 ................................ AGACCTACTCAGGGAGCGCATCTACGTTTATTCG 2487778 32 100.0 35 ................................ CACCTCGCCGGGAAGAGTCGCGTCCATCTCGTTAA 2487711 32 100.0 35 ................................ AACACAACCGTTTGTGCCGACGGGCCATATACATT 2487644 32 100.0 33 ................................ ACTTTTTCCACCTAACATATCTCTAGTCTCAGG 2487579 32 100.0 35 ................................ CAGTTAATCATGTTATCCTCTCCTTTAAGTGTAAT 2487512 32 100.0 34 ................................ CTCCTGAATGGACTTTCTCGCTTCCTGTTGATAG 2487446 32 100.0 33 ................................ TAGTTGTTAATGAATAGTACAACCAAACACAAG 2487381 32 100.0 36 ................................ ACAGGATGATGCTGACGAATGGCGATATAACGAGGA 2487313 32 96.9 0 ........................G....... | G [2487298] ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.8 34 GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Left flank : GATGAATACCCACCATTCTTGTGGAAGTAGGTGACAAGATGCTTGTCTTAATCACGTATGATGTGCAAACGTCAAGTATGGGAGGCACGACGAGGCTAAGAAAAGTGGCCAAAGCCTGTCAAAATTATGGACAGCGCGTGCAAAATTCCGTTTTTGAATGTATCGTTGATTCGGCACAACTAACCTCGTTAAAATTGGAGCTAACAAGTTTAATTGACGAAGAAAAAGATAGTTTGCGCATCTATCGCTTAGGAAACAACTACAAAACAAAAGTGGACCATATCGGAACTAAACCATCACTAAAGTTAGAAGATCCACTCATTTTTTAATGGTGCGAACCCTAAGCGCACATAAAATCCCTAGGGGACCCGCACCGAAAATAGAGCGGAATATGTAAAAGTGTGTAATGGATTTAAAAGGAATGGTGTGTTTTTATAAAGATAGAGCGAAACTTACCCTAAAGTGGGCGGAATATTCCCTTATATTAGGATGTTTTCGCT # Right flank : ATGAAAAAGACGAACAAATCAATCAAGTTTTAGAACAACTTAGGGCGGCAGACCCAGTAAACGAAATGTTTTCCGATGCTTTAGAAGAAACACAAATTGCTTTAGTGATTGCTATGGGAGGTGCAAAAGAGCATTGGAAATACATGGGATCTCACTTTTTTGGGGCTTTTTATGGTTTTAAGGAAGGTACAATCAATCGTGAAGAGTTGTTAGAAAAAGTACAAGAAGCTATTAAGGAAGATTTAAAAGGCGAGATACCAACCACCATTGTGAAAGGTTAAAATCTCATGTTGTTATCTGGTGTTCTCTGCAGAAGCTCTTCGAGATTAAAGGAGATTTTATATCACCTCGCAATACTATTATATAAAAAGATTTTTGAAAATATATTTATTTGGTTTTACAAAGTTAATATTAAATGCGTTGCGTTACGGACTTAAAGTGTGATTTTATGCTAATTGTGCAAAATTATGTGGTAGCTTTGTCGTAATGGTAGAATGAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2497918-2497417 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV917378.1 Salipaludibacillus agaradhaerens strain DSM 8721 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2497917 32 100.0 35 ................................ ACGCTGCGTTTGGATATAATACTCATAATCTGCTA 2497850 32 100.0 35 ................................ ACGCTGCGTTTGGATATAATACTCATAATCTGCTA 2497783 32 100.0 35 ................................ CTCGTTGCGATTCGCTAGGTTCGTAGTTTATTGTC 2497716 32 100.0 36 ................................ CTCGTTGGTGTTTGGAAAGCTGGTGTCTCCTGCTTT 2497648 32 100.0 33 ................................ AAGTAAAAACGATTACCCGCCGCAAGGACCGGC 2497583 32 100.0 34 ................................ GACAGTATGACAGTTGGTGAAATTTTAGGAGAAG 2497517 32 100.0 34 ................................ CATAATTTCATACATGAATTTAGTAGTAGTGTCA 2497451 32 87.5 0 .........A.........T........C..G | TA,T [2497421,2497430] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.4 35 GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Left flank : AGACTGGAGAGATGAAATGATCTAAGAGGGGGTATAGTGAAAGTCTTTTCATTTATGGTAAAATGTACATAATTACGTCATAAGATGTGAGGAGATTTGGGCTATGTATATCGCTCATGTTCGGAAATCTGATAAAAAGGTACATACGTTGAAAGAACGTCTGCTCGAAGCTAAATGATTGGAAGAACTTTTTGGTGTCTAATTTGGATTAAAGCATGTGACCGGAATTAGCAGAGGTGATTCACGATTTTAGGAAATGCAGTTACAGATTCCAAAATTTGAACATATCGATTAACCCATCAGATTGAGAAGGTCCACTCATTTTCTAACGGTGCGAACCCTAAGCGCACATAAAATCCCTAGGGGACCCGCACCGAAAATAGAGTGAAATATGTAAAAATATGTAATAGATTTAAAAGAAATGGTGTTTTTTTATAAAGATAGAGCAAAACTTACCCTAAAGTGGGCGAAATATTCCCTTATATTAGGATGTTTTCGCA # Right flank : AACACCAACGATATAGTGTAGAAGCTCTTCAACGGGGGGACGATTTGTCCACCATAGGGGATAACCACTTAATTAGCTAGTTAGGCTATAGGTGGTTATTTTTTATTATGAGATGACAGAACAGCCACAATTAACGCGCCAAAAATTTTTTTAAAACATCTAATTCACTTTTGCTAATCAAAAACACTCAACATTAAATTGGACTTTATTAAGTCTTTTAGACTATATATTTGGCAAATAGAAAAGTTACTTTAATAGAAAAACAGGGAATTTTGTCTATTTTATGCTGGATTCTCCCAAAATATATGGTAAAATGTACATAATTAAGTCGAAAGTATAGGGAGAATTGGCTATGTATAGGGCTCACGTCCGAGAAGAGGATGAAAAGGTACAGGCGTTGAAAGAGCACTTGCTCGAGACTAAACAATTGGCAGAAGGTTTTGGTGCCAAATTGGGGCTCAAGCATGTGGCCGGCTTAGCAGGGCTGCTTCACGACTTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2500831-2500399 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV917378.1 Salipaludibacillus agaradhaerens strain DSM 8721 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2500830 32 100.0 33 ................................ TCTCATTAAAATCTTCAAAATTGCCGCATCTAA 2500765 32 100.0 35 ................................ TTGCTTGCGGTCATCGTCATAATTAATAAGCTCAT 2500698 32 100.0 36 ................................ ATTTTCTCAGCTTCGCCAGTTCCAATCCTAATAAAA 2500630 32 100.0 34 ................................ CGCTAGTTATCTCCTTGCCTGTCCACTCACCACG 2500564 32 100.0 36 ................................ ACTTTATGCCCCTCCTAAACAGAAAAAAGAGGGTAT 2500496 32 96.9 35 .........A...................... AAACCTGTAAACAGATTCCCACCGCTTCTCTCTTC 2500429 31 96.9 0 ..........................-..... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 99.1 35 GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Left flank : GCGTGTTTTGCAGCATAGTCATAGCTGATGTCCTATTGCGAATTTGAAAGTTAGGGGTAGTAGAAGTAGAAAAAACGTTTTTTGGTGGAAAATTATCAGGGCCACTTGCCGTAGGGTGGGGTGAAAAAAATTAGTCGCAGGTAGGTGAGAATTGGACACAATGATCTCTTTGTTAGATATCGTATCGTGGAGTTACGTATATGCTAGAAGGGTTGAATGAACATGTGTTAAAATTGGTATTAGAGAGAGAGAATACTTTTTTTGAGTTATGGACTGTAAGAGCGTATTATGCTGCAAATATAACATTGACAAAAATAAAGGGGAAGTTTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGGGGACCCGCACCGAAAATAGAGAGAAATATGTAAAAGTGTGTAATGGATTTAAAAGGAATGATGTGTTTTTATAAAGATAGAGCGAAGCTTACCCTAAAGTGGGCGAAATATTCCCTTATATTAGGATGTTTTCGCA # Right flank : GGTATATCGGTTAAGGTGTAACTCCAAATCCCATGTCACACTATAATTGGAAGTCTCGTACAGTCAAAAAATACTTTTAAATTTCATAATCACTATACTGTCAAGAAAACGTATTAACCCTCCAGCTTAAAACGATGGACCAAACCAGTATTAGGTAATGGATATAACCTATATTTAATAGTGACCAATGAGGGCTAGCCTTGTCAGCATTCTAGAAAAGAAGTTTCAAAAGGGATTGGACCAGATACTAAAAAGCCATACTTAACCCGATTAGTTGATGATTCTTAGATCGGAACAAGTTTTCTCCCAACACGAAAAAAGCAGAGAACGCTTCCCTGCTTCCTTAACTATTTATAGGGCTTTTTTTTATTGTACTGGTATCAAACAAATAGGATAACACTAATTAATATAGCTTGGTAAAGGATGCTCCATAGAATAGAAGGATAATTACCTTTAGGTACGATAATATAACTACCCTCGATTAAGTTAGAGAAAATATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //