Array 1 452586-454505 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZD01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP1242 NODE_1_length_535646_cov_68.206012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 452586 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 452647 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 452708 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 452769 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 452830 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 452891 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 452952 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 453013 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 453074 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 453135 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 453196 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453257 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453318 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 453379 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 453440 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 453501 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 453562 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 453623 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453684 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453745 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 453806 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 453867 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 453928 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 453989 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454050 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454112 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454173 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 454234 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 454295 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 454356 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 454417 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 454478 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 470638-472236 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZD01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP1242 NODE_1_length_535646_cov_68.206012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 470638 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 470699 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 470760 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 470821 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 470882 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 470944 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 471005 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 471066 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 471127 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 471188 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 471249 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 471310 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 471371 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 471432 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 471493 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 471555 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 471658 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 471719 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 471780 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 471841 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 471902 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 471963 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 472024 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 472085 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 472146 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 472207 29 96.6 0 A............................ | A [472233] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //