Array 1 1220049-1220248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNHO01000003.1 Bacteroides uniformis str. 3978 T3 i gbf3978T3i.contig.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1220049 47 100.0 30 ............................................... GGAAAGAATTCAGACCGTCCTGCAGAAACT 1220126 47 100.0 29 ............................................... GTGTTGCTTGATGGTAATTACCTCACAGA 1220202 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Left flank : AGTGTTCTGTATGGCAGGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCATACTTGTCGGATTCTTTCAGTCGGCTAATGCTGACAGGACCGAAAATCTCGTCGGGCGTAGAGAAGCGGGACATCAGATATTCAAAGGCACGGGCATCTGTAAAAGCCGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGTCCCAGGAGCAGGATGCTCTCGCCTGCCAGAGCTGCCAGCAGGGAGAGGTTTATTTCAGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGACGAATGCGTTGGGTTATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGTGTGTAAAGATACAAAATAGTAGGGAAATCAGAGAGAGTCTTATTAAGATTCACTATCTTTGGAAAACAAATACACACAGACACGCACACAC # Right flank : TTAATACCGGTACCTACGTCAGCGCTCCCTCGTTGTGATTTGCTTTCATTAGCCTATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATGAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGTTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1313252-1313451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNHO01000003.1 Bacteroides uniformis str. 3978 T3 i gbf3978T3i.contig.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1313252 47 74.5 29 A.CCGT..G..AGCGAG.............................. ATATTTTGCGGAAGAACGGGGAAAAGGAC 1313328 47 100.0 30 ............................................... TTATACTTGTCAATAAGTTCTTGCTGGTTG 1313405 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 91.5 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Left flank : TCACACTGAATGCCGCTTCGGAATATTTTCCGACATTCAACTTTGCCATTACGGGGCAATTCCCGTCGGCATCCGCCTCGCTCTTTTTCAGGTAGAACGACACCTTTACATTTGCCTGATTCATAACCAATTCCTTTGTTTGCAAAATTATTATATGCAGAGTAAATGAACGGCATGAAAAATGTAGCGGAACGTAGAATAAGACCCCTCGGCCTGCAAACAAAGCCTGTATTTTTTTCTGATACGGAAAAATATGACTAAGTTTGCGTCAGCAGACATGGAAAAAACAGCGTTCTTTGCGGTGGTAAACGGGGTTATCAATGAAAGACGAAAGCTCGTTTTTCAAGCCTCTTTTTTTATCCCGAAAAGGCAACGGATAAGTAGTGATTTGTCCTCCTAACTCCACCTAAAACTTGCTAAAAGCCCCCTGCGGAAGAATGTGGTACAAAACGACATATCCCTTTTGCTATCAAACACTTTACATTATTTTCTCCAAAGTT # Right flank : TAGACTATTCATTATAATCTAATAATCAAATGGTTAAACAATCAATTTGAATCACAAAAAGCAAACAGTTTTCCACTAAAAATCCCACCAACAAGTGGGATTTTTACTTTTAGAATAACTCCAACTGTTGCCCCGGTGTATTCACATCTTGAACTTTTTTCCCATAAAAGAGCTCAATATTACCAAATTGTTTGTCCGTAATACATATAATTCCCACCTGTCCAAACTCCGGTAAGAAAGATTTAACTCTTTTTATGTGCACATCTGCATTTTCACTGCTGGCACAATGTCGTACGTAGATGGAAAACTGAAACATAGTAAATCCATCCTTCTGCAGGTTCTTCCGGAAGTCTGCATACGCCTTCTTATCCTTCTTGGTATCAGTAGGCAAATCAAATAACACCAGTACCCACATAATGCGATATTCACTAAAACGGTCCATTACATTTCCGGATATGTTATTTTACGCAACTCTCCATTAAAACATTTATAAAGAGAAG # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //