Array 1 2306446-2303914 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2306445 29 100.0 32 ............................. GACAAGCTCCGCCGGACTGCGGTCCGTACGAT 2306384 29 100.0 32 ............................. ACCACGATCGGCGGAATCCTCACCGCGCCGAA 2306323 29 100.0 32 ............................. CAGCGGCGGCCGGACCGGCCCTTCCCCCGCTC 2306262 29 100.0 32 ............................. AGGGGGTTTTCGGTCACTGCTCGGTGGGGGCT 2306201 29 100.0 32 ............................. GCCCCCGGTGCGTGCTCCCGCCACGCCGTGAG 2306140 29 96.6 32 ............................T CAGCGGTTCACTGTGGAGCGACTCGATATGCA 2306079 29 100.0 32 ............................. CCCGAACCTTGCCGGACGCAAGCCGTAGGGCT 2306018 29 100.0 32 ............................. AATCTTGCTATCGAGCTTGGGGGGCTTGAGTC 2305957 29 100.0 33 ............................. TCCAGGTCGGCGGCACCTGGACAGAGGTCACCA 2305895 29 100.0 32 ............................. GGTCGATGACCTGGAACCGCATCCGGCGCTCT 2305834 29 100.0 32 ............................. GCGCCCCGCGCTCGCCGAAGGGGAAACCAGCA 2305773 29 100.0 32 ............................. TGTCCTTCGAGGTCGACGCGGAGGAGGAGAAG 2305712 29 100.0 32 ............................. GAGGGCAGCATCCGCCAGCTCCTCGACGAGGG 2305651 29 100.0 32 ............................. CACCACCAACCACCACACTCGAAGGAGATCAA 2305590 29 96.6 32 ...............A............. GTCGTTCCGGGGCGAGCGCGCGATAACGTCCA 2305529 29 100.0 32 ............................. TTTGGGTGGCGGAGCGGGACGCGTGCGTGCGC 2305468 29 100.0 32 ............................. GCGTTGCGCCCGAGCGCGGCGTAGCGGGCCTG 2305407 29 100.0 32 ............................. ATCGAGGATCATTTCGTGGTCGACCCCGCGAA 2305346 29 100.0 32 ............................. GCCCGCACCCTGTTCGGGGACCAGGTCTGGGG 2305285 29 100.0 33 ............................. TCCCCATCACCGCCCGCCGTCCGTACGTGTCCG 2305223 29 100.0 32 ............................. CATCCTTGACCGGCATCGCGTCCCCTCTCGCT 2305162 29 100.0 32 ............................. AAGGTCGAGGAGAAAGACCTCGTGGGGTATGA 2305101 29 100.0 32 ............................. AGCAGGTGCAGCAGCACCACGTAGTCCAGGGC 2305040 29 100.0 32 ............................. TCGGCCTGAAGGTCTGCGTCATCAAGGACAAC 2304979 29 100.0 32 ............................. TCCGGCTCCACCTGGTCCTCGGTCGTGGAGGA 2304918 29 100.0 31 ............................. CCCGGGCGACAGCGACGGCCTGGCCGACGAC 2304858 29 100.0 32 ............................. ACCGAAAACAGAGGGAAGGGGGAAATCTTGAG 2304797 29 100.0 32 ............................. GCGCGCCGGCGGACATCGCGGCGGAACTTGGC 2304736 29 100.0 32 ............................. CGTCGACCCGCTGACCCTCAACGAGAGCCGCG 2304675 29 100.0 32 ............................. GGCTCGGCCTGTGGTCAGACGTCGCATGCCGT 2304614 29 100.0 32 ............................. CATCTCTTGGGTTAAACCCTGGTTACTACCTG 2304553 29 100.0 32 ............................. TGCTTGGCGATGTCGATGCGTTCGGTCGGATT 2304492 29 100.0 32 ............................. TTCGAGGAGCGGCTGCTGAACGCGGGCAATCT 2304431 29 96.6 32 ............................T GAGGGCATCACCGAGGGCGACCACCTCAAGGT 2304370 29 100.0 32 ............................. ACAACGGGCGCCGCAGCGGGCGGACTCGGGTC 2304309 29 100.0 32 ............................. CACCGCCACCGTCTGACCTCTCGAATTACCTC 2304248 29 100.0 32 ............................. GGCTGTCGCGTGCACGTGGGTCCCTCCCCTTC 2304187 29 100.0 32 ............................. GCCTACGCCACTTGGGAGGACGTCCTGTTTGA 2304126 29 100.0 32 ............................. TGGGCCGGCGCCCACATCGAGTTCGACCCGTC 2304065 29 100.0 32 ............................. ACGGAAATCAACACCTGCGATGAGCGCATTAA 2304004 29 93.1 32 .............T....T.......... TGCGGACACCCAGTGTCTGGTCGTCGGCACGT 2303943 29 93.1 0 ..............T...........T.. | C [2303932] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGATCTCCCGCATCTCGTAGGCGCCTTGGTGGCCGCTGACAGAGGGATGCCGGGCCTTCCAGGAGGCGATGACGGGCTCGATCAGGGCCCACCGCTCGTCAGATAAGGCGCTCTTGTAGGGCTGGCGATCGCTCACGAAGAGCACTCCAGCACGACAGGACTCCCCGATCAGCCCCGATACGACTGTGCCACACGTTCCAGCGACAACAAACGCGGCATCATGTCACATACCACCCTCTGGATGACGTGGACGATGTGCACCTGGCGGGTGCTGTGGGCTCGTGAGGACTGCGCGAATATAGACCGTAGGAAGGCTGTGTTGAGCAGGGAGGGGTTGGTGGCCATGGTGGCCGAGGTCTGGGCTTTAGGGAAGGCGGGTCGGCCAAGCAACCATGGCGCGAATCTCGGAAGAGGTGGGAAACCTATGTCTGGTATGCCGGAATTTGGGAAAGTGCTCTGCGAACCGCCTGTTGGCAGATAGACATGCAGGTCAGGGAGC # Right flank : GCCTATGGCCAGAACCAGGCGACGAGTGGCAGTCTCGCGGCGGAGGGCTCGGCAATGGGTGTGGGCGGCGCGGGGCGAGATCTGCGGTTGGTGTGAGTCATGCTCGGTGTGGGTGGAGGGGAAGTTCCACTTGGGAACGGCGTGCGGTAAGCCTGGCCACACGGGACGTCCAGCTGTTTGATGCGGACGCTGCCTCCATCGGTACGCCTTGCTGACGCGCTGGTGGCGAGCGTCACCACCCTGCGCCTCACTGGCCCCAGACCGTCGTAGGCCCTCGCTCCTGGCGTTCATGCTGATCAATACCAGGATGCAGAGCGGTGGGGGCGTCGCTCAGGTCGGGGTTCCCGTTCGCCGCTAGCTTCCGCGAGGTCTGCTCCGGGTCTCCCAGCCCCTCACTGTGTCCGAGGTCAACGCCGTGATCTCGCATTGATACATCGTGACGATACGGGGCCGCGTTCTCCAGGCTGCTGTCCACCTTCGCCCGCAGCGCCGGGTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2344972-2343600 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2344971 29 100.0 32 ............................. ACGTGGACACTTGGGAACGAGAGGGTAGCGAT 2344910 29 100.0 32 ............................. GGCTCGGTGGCCATCAGGACGGCCTTCCCTGC 2344849 29 100.0 32 ............................. AGCGACGACATGCTCTGCTCGGGGAAGCGGGC 2344788 29 96.6 32 ............................G ATCAGATGACGTAGCGACTGAGAGGCGGGAGA 2344727 29 100.0 33 ............................. GTCCAGCTCCAGCGCATGCTCGACCCCGAGGTG 2344665 29 100.0 32 ............................. TCGGTGGAGGCTGCGGCCACGGTGTCCGTGGC 2344604 28 96.6 32 ........................-.... GGCCGGGAAGGTGACCCGGCCCCGGGCGGCTC 2344544 29 96.6 32 ..................A.......... TCGGGGTCCTTCGTGATCAGGCTGTGGATCTG 2344483 29 100.0 32 ............................. TCATCGGCGTAATCAGTCGGGGGCGCCCAGGT 2344422 29 96.6 32 ...T......................... GTCTACCGGCCGCTGAAAGCGATGGTGAAGAA 2344361 29 93.1 32 ..............T..T........... GACTACTACCGGGCGGGCATCAACGCCACCGC 2344300 29 96.6 32 ...........G................. GGTACGTACTGCGACATCCACGGCTGCGACCT 2344239 29 96.6 32 ...........G................. GCCATGTCGGATGAGGAACTGGCGGAGCAGGC 2344178 29 100.0 32 ............................. TTCTCCGGGATCGGCTCCAGGCGGAACTTCGG 2344117 29 100.0 32 ............................. ACCCTGACGACCGGTTCACTCTCTGTCGATAT 2344056 29 96.6 32 ..............T.............. GCCTGTGCAGCATCGGACGTCTTGAGGTCGGC 2343995 29 100.0 32 ............................. TGTGGTGGGCGAGCGCGGGCGGCACGCAGGAT 2343934 29 96.6 32 ........T.................... CACTGGCTCAAGGAACAGGGCCTCGAGCCCGA 2343873 29 96.6 32 ...................A......... GATCTACCGGACGATCCTCGACGTCCACGCCA 2343812 29 100.0 32 ............................. ATCCACGACCACAGCTGGATCGTCGACCACGA 2343751 29 93.1 32 ...........C....G............ CAGCTGCACAACGTGGGCCTGTACCTCGGTGC G [2343737] 2343689 29 93.1 32 ...........GT................ GGCTCGCTTCCACCACCGTGGCGAGACTTGTC 2343628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGATCATTCCGGGCCTGGCTGGCTCCACAGCCGACGTCGCCGCGGTGTTCTCGACTGGCGACGCCACAGCAACCGGCACAGCCTGCCGCTCGGACTCGGCATCGTGCCGTCCGGCCAGGACCCGGCCCACCTAATGCTGGGCGATGACCAACTCTTGCCAAGTCCGTCTCGTGCCTCGTTCAATTCAGCCAGCAGACGGTCGGCCTGCTCGCGCAGCACCCCCACCTGCTGCCGGGCAGCGTGTTCCTCGGCTTCCAGTAACCCCATCACCGACGGCATCAGCCGCCCCTCCACGATGGCGACGACACGACGCATCATCCCTGCCGCATCACCACGGAGTTCATACCTGACCTGCGGAAACCAACCGATCAGGCTCGAAGGAACAGTGGGTGAAGGAGCACCGGATTCATCTCGTCGATCGCTGCAAGCTTGGCGAGTGGGTTGCTAGCTCCTGCCTCTTGTGGGAGCTGCCGGACCGCATCCCGCCCCCAGGTCGCGAC # Right flank : GGTCGCCCAACCGCTCTGTCCCGAACAGTCGAGTGGGGCAGTGGGTGCGAGGAGAATCTGTTGGCCAGCGTGACGCTGCGGGAGCGCTATGAATCCAGCCACTGGACAAGTGCCCTGTCGCCAAACACTGCGGATGGGGCCGTCGAAGTACCCGATTCGAGCTATGCAGAGGGGCGGGATGCCAGCTGCTGAAGGGAGGACTGGCCGGATGATTTTGGCTATCAACGTCGCAGTTCTGCTTGCGGTGATCAACGTTATGCGACTGTGTCGACGCACACTGGCTCGGAGCCAGGTCGCTGATGCGACAGATGGCATCAGCCGCTGGTGCAAGATGGCCCGTGGTCACCGGCTCTCCCTGAACTGTTAGCGTGCCACGAGATCAACTTAGGGGCAGGGGCGGACCTGGACGGATGTCAAGCGGCCACTTTGGCCGTTGAGTCAGGGGCATCATGGCCTAGCGATCGTGGAGTAACGCGCCCCTCTCGGACACCCTCCGGCCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2357416-2354533 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 2357415 29 96.6 32 ..............T.............. GCGCAGCGGGAGGCCGAGAACGCCCGGCGCAC 2357354 29 100.0 32 ............................. GGGCGGCCGTCGTGCCGCAGACCGATCGCGAT 2357293 29 100.0 32 ............................. GTGGGGAGGACGTCCTGGCGGTGCTGCTGCCG 2357232 29 100.0 32 ............................. CGCGAAACCGCGCCGCTCTCGCCGTCGCAGGA 2357171 29 100.0 32 ............................. TGGCCTCGGTTCAGTCCCTGGTGGAGACGAAG 2357110 29 100.0 32 ............................. GGCAACGACCCGGACAACATTGCCAACCGGAC 2357049 29 100.0 32 ............................. GAGGCGATCACGCAGGCCAACGAGGCAATGAA 2356988 29 96.6 32 .....T....................... GACGCCGAACGCCTTGCCCCCGTCAAGACCGG 2356927 29 100.0 32 ............................. GAGGCCGGGGACCTGGTCTTCCCGGAGGCTGA 2356866 29 100.0 32 ............................. ACAGAGGGGAGTTGCGGGGCGCATCGGAAGGG 2356805 29 100.0 32 ............................. GGCCCTCACCACGGCCAGCGCGATGTTGTCGG 2356744 29 96.6 32 .................A........... GGCACCAAGCCGAAGACGTAGCCGGTGCCGGC 2356683 29 100.0 32 ............................. GATGGGCGATAACCGTGCGGCGAATGTCAGTA 2356622 29 96.6 32 .....................G....... ACCACGGTCATGGAGATCAAGGCCAAGTGCCG 2356561 29 100.0 32 ............................. CGCTCCCCGGTCGGGGTCAGGATGATGAGCTG 2356500 29 100.0 32 ............................. CAAGATCGCATCACGGCCGCGCTCCAGCTCGG 2356439 29 96.6 32 ..................A.......... TGCCCGACGACGAACCGCGCGAGAACTGGCTC 2356378 29 100.0 32 ............................. TACGCAATCCGCGAGGAGTGCAGGACCGCCTG 2356317 29 100.0 32 ............................. CGCAGCTGACCAGCCGCCTCACGCCGCGTCCG 2356256 29 100.0 32 ............................. GGCAAGGTCGTCATCCACAACGGCGAGCCCGT 2356195 29 100.0 32 ............................. TCGGGCACGAACGCTTTGCGCTCGGCATCTTC 2356134 29 100.0 32 ............................. ACGGCGCCCCCTGCACCACGCAGGACGAATCC 2356073 29 100.0 32 ............................. ACCTGGACATGGGGCGGTCCCCGGCGGTTTGC 2356012 29 96.6 32 .......................C..... AGCAGGCGCTGCATGTCACGATGACGCAACCG 2355951 29 100.0 32 ............................. TCCGCCACGACGAACTCGGGCGCATAGCCTGC 2355890 28 96.6 32 ..-.......................... TCACGCCCGCCCAGCAGGAAGCGCTGGGGTCG 2355830 29 100.0 32 ............................. AAGGCGCAACAGGCGGCTGATGCCGTCTGCCC 2355769 29 100.0 32 ............................. AGGCCGCCGCGGGGGCGGCAGGGGCCCGGTAC 2355708 29 100.0 32 ............................. AGGCCGCCGCGGGGGCGGCAGGGGCCCGGTAC 2355647 29 100.0 32 ............................. GCACGGCGCTCGGCTGGCGGTTCTTCAACGGC 2355586 29 100.0 33 ............................. CCCATGGATCACCTGGGTCAGGTCCGGCTCGCA 2355524 29 100.0 32 ............................. CCGAAGGAAGCCCTGCGCAAGGGCAGCATGGC 2355463 29 100.0 32 ............................. GGGGTGGTGATCATGCCCTCGGGCATGCGGAT 2355402 29 100.0 32 ............................. CACCGCAGGTCAGCTGGCGTAGCAGCTATGCC 2355341 29 100.0 32 ............................. ACCTCGACGGACATCGTGCCGGTGGGCAAGGG 2355280 29 100.0 32 ............................. GGGAGGAACCATCAATGGCCACCATCAAGATC 2355219 29 100.0 32 ............................. GCTACGTATGGCGTGTCAGTGGGTGTCAGGCG 2355158 29 100.0 32 ............................. GCCGTGATCAGCGCGGGCAACCCGGCCACATG 2355097 29 100.0 32 ............................. TCGGCCTGACGCTTCGCCTCGGCCGGCCGAGC 2355036 29 100.0 32 ............................. TTGCGCATGTAGGAGACGGCGCCGAGGGCCGG 2354975 29 100.0 32 ............................. GAGTGCGACGGATCGTGCAGCCGGTGGGCCGA 2354914 29 100.0 32 ............................. GCCGCGCCCATCAGCGCGAGCACGTGCTCCTC 2354853 29 100.0 32 ............................. CAAGATCGCATCACGGCCGCGCTCCAGCTCGG 2354792 29 100.0 32 ............................. TGGAGGCCCAGGCCCGCGGCTACGAGGACCTG 2354731 29 86.2 78 ........G..C..T.............T GCCTCGGGGGACCAGTTCTTGAACCTGGCGCGCTGCGGGGTGGCCCCTGGCGGCCGCGAGCGAGGCGTCGTCCGGAAG 2354624 29 75.9 31 GA.T....TA....TA............. GCTACGAGGCGCGGTGGCTGGAGACGGCCAA C,A [2354598,2354607] 2354562 29 82.8 0 .......T.....T.....T......G.T | A [2354537] ========== ====== ====== ====== ============================= ============================================================================== ================== 47 29 98.3 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGTGCACGCGGGCCGCAACTACGCCGAAAGCGACGGCCCGGACAGCGACGAGGTGTTCTGGTGACGGTCATCGTTCTGACCAACTGCCCGCCCGGCCTTCGCGGCTTCCTCACCCGCTGGCTCCTGGAAATCTAGGCCGGGGTCTTCATCGGCAACCCCTCGGCCCGCGTCCGTGACGCCCTCTGGGATGAGGTTCGCCAATACGCGGGCCAAGGTCGTTCCCTGCTCGCCCACACCACCAACAACGAGCAAGGTTTCACCTTCCGCACCCACGAACACGCTTGGCACCCCATCGATCACGAGGGCCTGACCCTCATCCGACGCCACCACCCCAAAGCACAGCAGACCACCGGCGTACCGAAACCAGGCTGGAGCAAGGCATCCAAGCGCCGCCGCTTCGGTAGGCGAGCCCAATAATGAGCCAAATCGCCGAATTGTCGGAATCGGTAAAAGTATGGGAAACGGGCCTCTGTGCACGCTGAACCCGCAGGCCACGCAGT # Right flank : ACCGTCCGGCAGAAAGTAAGTAGTGGTGACGATGAGCCTGTCGGCCGATCAGAAGGAGAGCGTATCCGTCGTTCGGTGACTGGAATACGGATGCTTTGGGAACGGGCTTGGCTATGACTTCGCAACTCGCAGAGTGGGCCTGGAAGGCGGCGAAGACGGAACTGGCGTCAACTTTGCCGCGGCGCTGGGCGCACTCGCTGGGTGTGGCCGCAAGGGCCGTGGAACTGGCTCCCTTGCTTGGTGATTCGGCAGGGCTGCTGCGCGCGGCGGCAGTTCTGCATGACATTGGGTATTCACCGGGGCTCGTGGCGACCGGGTTTCATCCGCTTGACGGTGCCCGGTTCCTCCGTGACGTGCATGGTGCTGATGAGCGGCTGGTGCGGTTGGTGGCGAATCACTCGTTTGCGTTGCTGGAGGCCGAAGAGCGTGGCTTGAGGGAAACACTGGAGGAGGAGTTCCCGCTGCTTGACGAGCCGCTGCTCGTGGACGCTCTTGTGTGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2362930-2360524 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 2362929 29 72.4 54 ...........CGA..T.A..G..T...G GAGGCCGACGTGGGGTGTTCCACGCTTCTTTCACGGGCACCACCGGCAACTACC T [2362925] 2362845 29 75.9 126 G..........CGA.......G..T...G CTCGCGCCGGTCACCTTCGCGAGCGTCTTCTCGTGCTCCCCACCGATGTGGGGTGCTCCGCTGCCATCCGGATGGCCCGAGCGGAGAAGACCGTCCTCCCCGCCGACGTCCCCGGGGGTGCGGATC 2362690 29 82.8 32 G.C........CGG............... CCTCTCTACGGAGCGGCAACGGTCATCACCTT 2362629 29 96.6 33 ...A......................... GAGACGCTGCTGTGTCCCGGTCAGGTGGAGGCG 2362567 29 93.1 32 ..............T.............A GCGGCCAGCGGCCGGGTACGGTGGCGGGCCTG 2362506 29 93.1 32 ...T............T............ TCGGTGACGCCGCGGCCGGCGAGCATGTCGTC 2362445 29 96.6 32 .........................C... TGCGCCCCGGACAACCTGCGGGCGATGTGCCA 2362384 29 100.0 32 ............................. GGCACCGGCTCCGCGTCGATCGGCACGACGTA 2362323 29 96.6 32 ...........G................. ACCGGGACGAGCGCCGGGGCGATGGCACCGAT 2362262 29 93.1 32 .......T......G.............. CTCCTCGCGACCCGGGTCATGGCCGCCATCCG 2362201 29 100.0 32 ............................. GAAGCCGGCGCAAGGCGGTTCGGGGTTCTGTA 2362140 29 93.1 32 .................A...G....... TACTCAGAGCTGAGGGCGGAGACAGCAGTCTC 2362079 29 100.0 32 ............................. CCGACCGATGGGTGTCCGGCCTTCCAGTTGGA 2362018 29 100.0 32 ............................. GGCAAGGTTGTCGAGCGCGGGGACGAACAGGG AC,A [2362001,2362004] 2361954 29 93.1 33 ........T..G................. TCGGTGTGTGCGGGGGGGTGCGGGCGCTACGAA 2361892 28 86.2 32 ........T-.G......A.......... GATGGCCAGCCAGGTCGATGCCAGTCTCCTCT 2361832 29 93.1 32 ...........G..T.............. CGCCCTTCCTGGCCGCGCGGAGAGGGGACCTT 2361771 29 96.6 32 ...........G................. GTGAGCACGCTCAGCACCGCGGCGTTGATCGC 2361710 29 93.1 32 .........A...T............... CAGAAAATGACGGGGTCCCGCGCGATGAGCGA 2361649 29 86.2 32 T..G.............A.......C... GAAGGCCGCGAAGGCGCCGCCTTCTACTTCAA 2361588 29 93.1 32 ........T..........A......... TGCGAGTTCACGTACAACACCTTGTGCCGGTA 2361527 29 93.1 32 ............G.T.............. GACCAGAACAGCGGCAGCTTCTTGGCGTCGAT 2361466 29 89.7 31 ............T......A.C....... GGTCGTGAGCGTCAGCAGCGGCCTGACGGGC T [2361439] 2361405 29 96.6 32 .........................C... GCCATCAAGCCCGCGTTCAACGCGATCGCGGC 2361344 29 96.6 32 ...........G................. ACCAACACGCTCCCGGTGACCGCCAGCTACGA 2361283 29 96.6 32 .......G..................... TCCACGGTGTGGCGCAGCGGGACCTCCAGCGC 2361222 29 93.1 32 ..........T................T. AGCCGCGTGCCGGGGGAGTGGGTCGCCCGCAT 2361161 29 100.0 32 ............................. TGGAGCAGGCGCGCAAGAAGGCGACCACCGCC 2361100 29 96.6 32 ..........T.................. ATCTGCCGGATCGCAGACCTGCCCGACCTCTA 2361039 29 96.6 32 ......T...................... GACCCGGCGGGGCAGAGCGGGGGCAACACCGG 2360978 29 100.0 32 ............................. GGCGGGATCTGACGCTCGACCGGTGGCGGAAA 2360917 29 96.6 32 ..........T.................. CGTCGAGAAGGTCCAGGAGATGTTCGGCAACG 2360856 29 100.0 32 ............................. TGCATCCCGGTCGTGCTGAAGGTGGCGCCCAA 2360795 29 100.0 31 ............................. GGGCCCGTCTACATTGGAACATGGCTGGCTA 2360735 29 93.1 32 ...........G.....A........... ACCAAGGCGCAGGGCGAAAAGGTCGTCCAGGC 2360674 29 100.0 32 ............................. GCGGCCCTGGGTGATGTCCACTGCGTCGTCGC 2360613 29 96.6 32 ............T................ TGGTGGCGATGCTCGCCTCGGTCGGCCCCGGC 2360552 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 38 29 94.2 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CATGGGGGACTGGAATTGCTCCCCGCGCCCGCGGGGGTGGTCCCAGGTGGCCGAACGCGCCGCGCACCGTCTGGAGCTGCTCCCCGCACACGGGGATGGTCCCGACTCGCCGAGCTCGACGGCCAGGACGTACTGCTGCTCCCCGCACCCGCGGGGGTGTTCCGCCGGTGTGGTGGAGAAGGGGACGGACACCGGGGTCCTCCCCACCGACGCGGGAGTGTTCCGCTCAGGACCACCATCGAGTACCGGGAACAGCCGTGCTTCCCGCCAACGTGGGGGTTCCGATCACGGCATGGGAGACAGGGCGTGTCGTCGCATGCTCCCGGTCGACGTGGGGTGTTCCGGGAACCTCGTGCTCGCGGCCCATGATGGCGTAGTCCTCCCCACCGACGTGGGGGTGTTTCCGGTGCTCGTCATCGACGCCGACCCTAAGTCCGGGTCCCTCCCCGCCGATGTGGGAGTGTTTTCCGACCGGTCCGAGGGGCGCAGCCTGGGCGCCC # Right flank : GTTCCGTGGGCGTGTACGGAACTTTGTGTAAGTCGCCCTGGGGGTGACCTGCTCGCGAACGGCGAGGTAGAGCACCTTCAACGCGGCCTGCTCGGAGGGGAAGTGTCCACGGTTGCGGGTGGCTTTCCGCAGCCGTGCGTTGATCGACTCGATAGCCCGCATGAGCGTGCTCACCCTCCGGCTCGACGGCCCCTTGCAGGCATGGGGGGCCTCAGCCCGATTCGCCCGGCGTACCACCGAGTCTGCCCCCACCAAGAGCGGCATCATCGGCATGCTCGCCGCCGCCCGCGGCCTGGACCGCGGCGACGACACCGAACTGGCCCGCCTCGCCGCGCTCCGCTTCGCCGTCCGCATCGACCAGCCCGGCGCCCGAGTGCGCGATTACCAGACCGCGCGGCACCAGATCACAAAGGTCTCCATGCCCGTCTCGGAACGCTACTACCTGGCCGACGCCGTGTTCGTCGCAGCAGTCGAAGGCGAGGACGAACTCGTCGACCTCC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 5 2379744-2378443 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 2379743 29 93.1 32 ...........G..C.............. CCTCCGGCTTTGTCCCAGAGGTTGAAGAAGAG 2379682 29 96.6 32 ..............C.............. TCGGCGCCCAGCTCGCCGCGTGAGGGCAGCCG 2379621 29 100.0 32 ............................. GACCGTGCATGGGTGGCCGGTGGCGTACTGGC 2379560 29 89.7 32 ........T.....C.T............ AAGCCCCGACCACCTTCCGGGTTAGGGGGATG 2379499 29 93.1 31 ...........G..C.............. CCGCCGGGCCGATGTTCAAGATCAGCGTGGT 2379439 29 100.0 32 ............................. ATCCACGACCACACAGCGATGATCAAGGCCGC 2379378 29 93.1 32 .............TC.............. ATCCACGACCACACAGCGATGATCAAGGCCGC 2379317 29 93.1 32 .............TC.............. ATGGAGAACACGGCCATGACCGGCACGAATCC 2379256 29 93.1 31 ..............C...A.......... CTTCGTGAACGACAACAGTAGGCCAGCACAC 2379196 29 93.1 32 ..............C..A........... AACCGATGGCCGCCCCTGGACGGCGGCCACAG 2379135 29 89.7 33 ............T.C.T............ GCAGGCTTGATGCCGTTCGCCCACAGCCATGTG 2379073 29 93.1 32 ..........T...C.............. GTCCCGGCGGTGCGCAGCCCGCCCCACAGCAT 2379012 29 86.2 32 ..........GG.T..........A.... GGTCCGCCGTAGTACAGCGGGTCGGAGGTGTC 2378951 29 96.6 32 ............T................ ACGTCAGAGTCTGGCTGGTCGACAAGGAAGGC C [2378942] 2378889 29 86.2 32 A...........T.C.T............ GCCGTGAGGAGGACGCCCGACTTGGCGTCGGT 2378828 29 93.1 32 ..............C..T........... TCCGTTCGCGTGGCCGACGCCATCGTCCGCAA 2378767 29 96.6 32 ................A............ GGCGCGGCAGGCGTCCGGTCCGGTCCGAACAG 2378706 29 89.7 31 ...........G..C........A..... GAGTACGTCGAGTACACCCCGAAGAAGGCAA 2378646 29 93.1 147 ..............C.............A AGACCACCAAGGACTTTGCGGGCGGGCTGGACTGCTACCGCACCCCCGGGGGGGCCAAGTGATCGCTCTGGAGAAGGTGGCCGCGTCGGCCTGCTTCCCGGGTCTGGGGTGGTGTCGAAAGGGGAGGCACATGGCCTTGAAGGCTTG 2378470 28 86.2 0 ...........GT........-.C..... | ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 20 29 92.8 38 CTGCTCCCCGCACCTGCGGGGATGGTCCC # Left flank : AAGATGGTCAACTCGGGGCTGATGGGGACGGTCTTCTGGAGCGTGCGGTGGCAGAAGATGCGTGGCATTGGCAGACGTATCAGCGGCCAATCTCAGCTGAGACGCTACGGAAGCGACTACACGTTGGGGCGGCCAGGTCCCGGATGTTGGTGTCCATGGTGCGCTCGGCAAGGATCGGTAACGTGACGATGGAGGCGTCGTCTGCCCAAAGTGATTCTTCAACTCCGCAGCTGGGTCACCAAGCTGCCAGTGTGGGCGAGGAGGGGTCGAGGTAGAAGGGCCCCTGTGGTGCCCTGCGGCGGGGCCTCCGTAGGTGTTGCGGCGGCGTTGCTACTTCGTGTCGTTTCACGCCAAGGCGGGGGAGCGACTCATGTTCTTGCGAAATGATTTGGACGGTGTCGAAGCCGAAGAATTTGCGGGGTGGATCTCGAAATACATATGCCCGGAATGCCGGGCTTCGTGAGGGACCTGCTGCCAGATAGACATGCAGGTCACGGAGT # Right flank : GGGCCCGCCTCTGTCGGATTGGATCCCGTTGGCGCGGGCTCCATATAGCGCACGACGGATGCGGCGCCTGGGAATTACTCCGCTGGTCGCAGGGCCAGCCGCCTCTCAGGTTGGCGCCAGCCTGCGGGTAAGCGTTGTACCGAGGGCGGGCGCGGGCCTCACCCGAGCTCACCCCCGGTGGTCCCCGCGCTCGCGGGGCCAACCCGCTGTGAAGACGTAGGAACGGAACATCCCCGACCCGCGATGGTGCGCTGGCGAGTAAGACTGGGGCAGGTGGATTCTGGCATTCATCATGCGGAGCCGTGGGCTGGTGTGCAAGGCTGACGCCACGTGCAAGACGAAGGAAATTGGGAGGGGAGCCCAATTTTGTTCAGTTTGCTGGATGAGCCGTGGCTGTCTGCGAGGACTGTCGGCACAATTGCAGGGGGAGGGGTGCAGGGCGGGCTTGGTCCGGTCGAGAAGGCTGGCGTTCGGCGTCTCCTTCTGAGCGCAGATCAGTT # Questionable array : NO Score: 4.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2381898-2381503 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCY01000001.1 Streptomyces rapamycinicus NRRL 5491 unitig_0_quiver_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2381897 30 96.7 31 .............................T CAACGACCCGGCCCAGCGCCGTCGGGGTACC 2381836 30 96.7 31 .............................G ACTTCGCGCTATCCGTCTCCGTCACCAACTG 2381775 30 93.3 31 .................A...........C AACCCGCGCAGAACGGCACGTGGGGCCGGAC 2381714 30 93.3 31 .........A...................G ACCTGATCGACCTCACGATCCGTACGGACGA 2381653 30 100.0 31 .............................. TCCGACCACAGATCCAGCAACGCCAGCGAAT 2381592 30 93.3 30 ............................GC CTCACACCGGATGTGAGCGTCGCCGACATG 2381532 30 90.0 0 .............TA........A...... | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.8 31 GTGGTCCCCGCGCCCGCGGGGGTGGTCCCA # Left flank : CCATGGGAGGAACCGATCTGGTGACAGTTATCGTCCTCGCCAACTGCCCCGTAGGACTACGCGGCTTCCTCACCCGCTGGCTCCTGGAAGTCTCCCCCGGCGTCTTCCTGGGCTCTCCCTCCGCCCGCGTACGGGACATCTTGTGGGAAGAAGTCCGCCAGTACAGAGGCAAAGGCCGGGCCCTACTGGCCTACCAGACCCACAACGAACAAGGCTTCACCTTCGCCACCCACGAGCACGCCTGGCAACCCACCAATCACGAGGGCCTCACCCTCCTGTATCGACCGACAGTTCAGACCTCCGCGCCTAGCAGCCGACCCGCTGACCAGCCACGCCAAGGCTGGAGCAAAGCAGCCAAAAGGCGACGTTTTGGGAATCGGTGACACGAACGGACTGAGTACGGTCCTGCGGCAACGAGACGACCTGCCAGAGAAATGTCCGTTTCCGTGAGAGTAAGTAAAATCCACTCAGTCACGACGTGAAACAGCAGATCACGACGT # Right flank : CACACAGCCCCACCACCGCGCCGAAACCGTGCTGGTCTCCACACCCGCAGCGATGGGACAGCTCCCAGCGGGCATCCGTCACGCATTCTGTACTGTCGTGGTTACCAGGCCCGTACTGGTGGCCCCTGGGATGCCTCAATTTGAGGGATGACCAAAGGGACGCCCACTCGTGCGGCGGTCCCGGCCTCAAAGTCGTGGGTACGCTTCAGGGCGAGTAGTCCCCGTGAGTGCGGGGGTGGCCCCTGGGATGCTGCAGGCGCCGAGGAGCTGAACAAATGGTCCCCGCGCCCGCGGGGATAGGTGACCCCGTCACCTGCGCTCAGTGTGTGACGCGGTTGCGTCCTCGGAAGTGGTGTACGGGTTCCGCCTGATCCAGGCGTTTGTCTGGGCGTCGGAGTGTATGCCTGCATAGAGAGACGGCCATCGGCTGACCCTGCCGCGACACGACTGCTCCCCGCGCCCGCGGGGATGGTCCCCACATAAAGTCCGCGGGTCTGCTG # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //