Array 1 92314-93809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJC01000017.1 Escherichia coli strain MOD1-EC6340 MOD1-EC6340_17_length_94009_cov_26.7995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92314 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 92375 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 92436 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 92497 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 92558 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 92619 29 100.0 32 ............................. GCAGACGTTACGGAACGGCGCGCGAGTATAGC 92680 29 100.0 32 ............................. AACAGGCCTGGGTCGACGAATTGCAAGAGGTC 92741 29 100.0 32 ............................. CAACTTGGCGACACAGACGTAACGGCGGTGTC 92802 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 92863 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 92924 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 92985 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 93046 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 93107 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 93169 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 93230 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 93292 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 93353 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 93414 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 93475 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 93536 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 93597 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 93658 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 93719 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 93781 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50964-49775 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJC01000025.1 Escherichia coli strain MOD1-EC6340 MOD1-EC6340_25_length_76300_cov_28.2855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50963 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 50902 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 50841 29 100.0 32 ............................. CATCGCACTAATCTATTTATTGACGTTGCGCG 50780 29 100.0 32 ............................. ACCGGTTTTAATTGATGCCCACGCTTCGTTTA 50719 29 100.0 32 ............................. AAAACACATTTTCAATAGATGGCATTCAGCTA 50658 29 100.0 33 ............................. CGATTATGAGTTTGCCGGAGAATAGTTACCTGC 50596 29 100.0 32 ............................. CCGAGAAAGACGGCGAGTAATGCAAGGGCGGC 50535 29 100.0 32 ............................. AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG 50474 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 50413 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 50352 29 100.0 32 ............................. TCATGAAGACTTCGATTATTTCTTGATACCTG 50291 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 50230 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 50169 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 50108 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 50047 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 49986 29 100.0 32 ............................. ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC 49925 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 49863 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 49802 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 271599-271451 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJC01000004.1 Escherichia coli strain MOD1-EC6340 MOD1-EC6340_4_length_293493_cov_26.9074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 271598 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 271538 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 271478 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //