Array 1 1622059-1622298 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU745373.1 Cardiobacterium sp. Marseille-Q4385 chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1622059 32 100.0 37 ................................ CGAACGTAAAGCCCAACAAGAAGAACCTAAGTTGTCT 1622128 32 100.0 38 ................................ AGGAGTCTCTATGAATTTTAGTGAAATTCATCGGGTCT 1622198 31 96.9 38 ...........-.................... TCAAAGCAGGACTCAAAGAAGCTGCTCCAGACTGGTCT 1622267 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 99.2 38 TAATCCCTTTGGTTCAGGGACGTTTTTTATTC # Left flank : GCGAGCCCAGTAATGACGCCGCTTGGCGGGGACAGTATTTACGCCGTTTGACGAACCCAGTAATGACGCCGCTTGGCGAGCCCAGTAATGACGCCGCTTGGCGAGCCCAGTAATGACGCCGCTTGGCGAGCCCAGTAATGACGCCGCTTGGCGAGCCCAGTAATGACGCCTCTTGCCGGGGCCAGCAATGACGCCGCTTAGCGAGCCCGGCATTTACACCGCTTGGCGAGCCCAGTAATGACGCCGCTTGGCGAGGCCAGCAATGACGCCGCTTGGCGGACCCAGCAATGACGCCGCTTGGCGGCGTTTGTCCCCTTCCCCCGTGGGGAAGACCGGGATGGGGGCAGTGAACAAGTCGCGAAGCGATAAAACTCCATAACCACGTCACTTGCCGGGTCCAGCAATAACGCCGCTTGGCGAGCCCAGTAATGACGCCGCTTGGCGGCATTTGGCATGGCACAACAGCACAACGGCAGGAAAACGACGCTGGGCATAACGTC # Right flank : CAGATCCCGAGCACGTGTTTCCCCAAGAGCTAACGGTCTTAATCCCTTTGTTTCAGGGTCTGCCGATTGTTAGAGATCAGTTTTCCGTCATTCTAGGGCGGTTTTTCTGCAAATGCCATGTCATGTTTTCTGCGGTTTTGCCGTGTTTGCGCGCTTCGCGCCTGCAAGCCCGCCGGGGCGGTTTTCCGGCGGCGGGCAGGCATCGCAAGGGGCGGCGGCTCAGAGGGTCAGGGTTTTGAGTTTGTCGAGGCAGTCTTCCAGTTCGCGGCGGAGTTTGTCTTCGTTGTTCAGGGTGGCGGTGATGTAGTCATTGCCTCTTTCGCCATGCGTGAGCGCGTTGCGAATGTGCTGCAGCTTTTTGTATTTGTCGTAGAGGGTGTGGCTGTGCTGGCTGCCGTTTTTAGTGTCGCGCCAGTCGGCTTTGCGGCTTTGGATGTAGCGCAGCACGGCGTTTTTGCGTGTTTCGTAGTCGTCGTTGTGCTGGAAGTGGTTGTCATCCA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATCCCTTTGGTTCAGGGACGTTTTTTATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2012558-2012247 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU745373.1 Cardiobacterium sp. Marseille-Q4385 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 2012557 35 100.0 30 ................................... ATCATTCCAGCCTTCTTGGGGAATTTCTTG 2012492 35 97.1 34 ...........T....................... CAAATCTGATGATCCCTTTCTCAGGATCAATTTA 2012423 35 100.0 35 ................................... CCCTTATCCGGCTCCCATGCCTGGCTAAATTCGCG 2012353 35 100.0 34 ................................... ACGTCGGATCGACGGTAGAGAGCAGATCGTGCAG 2012284 35 94.3 0 ...................G.........A..... | CTT [2012251] ========== ====== ====== ====== =================================== =================================== ================== 5 35 98.3 34 TTTAAAAACAGACCCTGATTCAAAGGGATTAAGAC # Left flank : ACCACCTATCTATTAGAGGACTACCTGAGGACTACTTTATGAACGAAAAACAGATCCGTATCTTGGCTACCGTCGCCACCATCGCTTCCATCTGTATGTACACATCCTATATCTTTCAAATTCAAGCCAACTTGGCCGGACACAAGGGCAATCCGATCCAGCCATTATGTGCCGCCATTAACTGCACCCTGTGGGTGGCGTACGGCCTTTTCAAAAAACAACGCGACTGGCCGATCGCCATTGCCAACTCGCCGGGCGTAGTATTGGGGCTCATCACCTGCATCACCAGTCTGTAACCCCCGCAGCGACAACGACGAAAAGACCGTCGGGCAGGACACGGCGCATTGACGCCGCCGACAAGAGGCGTAGCATAGGCGCGTCGGCAGAAGATAAAAAATACGGCAGGAGTGAAAAAATGAGACAGCTTTGGCGACAAGAAAAAAATTGGAAAGCTGTTTTGCAGAGAATTGATAAGAAAAGAAAATCCAGCACCCCACAGG # Right flank : ACAGCGCAAGCTGTGTCTTTTTTGTTTGGCGGTGGGGCATTTGTATCGAGCATCGGTATGGATAGGCATCAGCCGTCAAGCGGTGTAAATACTGGCCTCGCTAAGCGACGTAAATACTGGGCCCGCCAAGCGGAATAACGCGGCGGTTTTGATGTCGGTCAAGCGGGGTTGGTGCGGTGTTTGTCGTGTGGCTGTGGCAAGACGTTAGGTTGGCGCGCTTTTTCTGTGGATTTTCCCCTTCCTTTCTGCAATTCTTTGTGGCTATAATGTGCATATAGTGTTGCAATGTGTTGATAATAACCAATCGTATCCACACATTTCACCACTGCCGTTTGTCTTGCAGGCGGTCCCCCCCTTCCTTTCAGATGCCTTGCATGAAGTGGGCCTGCCGCCACTTTTTGTCCGGGCAATCCTGAAGGTTTGGGTTATCCCCACAACTTTTTTGGAGCTAATGATGCAATTCCATGCCAAGCAAAATGTGCTGCCCATGTTTCGTCTCA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAAAACAGACCCTGATTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 2372895-2373134 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU745373.1 Cardiobacterium sp. Marseille-Q4385 chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2372895 31 100.0 38 ............................... GTTTCAAAATGATTTCTTTCATGACTTTTTCTCGAATA 2372964 31 100.0 38 ............................... CACCGAACCGTTGCCCGTAGCCGTGTTGTAGTCCGAAT 2373033 31 100.0 40 ............................... CACAGCCGCGCGGCCTTTGGCATTAAGAGCCAGATGAATA 2373104 31 93.5 0 .....T........................A | ========== ====== ====== ====== =============================== ======================================== ================== 4 31 98.4 39 AAAAACGTCCCTGAACCAAAGGGATTAAGAC # Left flank : AGAAAACCTGCCCTGCACACCAGTCACAAGCCTTCCTAAAAGAAGGCTTACGGATCAAGCGACGGCACCCCACCAGCAGGGCAGCGCGGCAGAAACATGCCGCGCACGCAGAACGCGAGAAAACCCTTCGCCGCTTGCGAACAAAGCATCGCTCCCGCAGGAAAAAAACATAACAAATCGGCCTAAAACGTCACCCTATGGCATTCATCAAAAAACAGCCATAGAATGCCCAAAAACCGATCTCTAACAACCGATAACCCCTGCATAAAGATAGACCGGGCGCATAACACCTTGAATGCCCATCCGGATAAAACAAAATACCCCATGCAGATATAGGCCTGACAAAACCCTTGCCTGCCCAGAGACGCTCCCGCTCACAGCAAATAGCCCGGAAACCATCTGTGTGGCAGCAAGACAACAGCTTTCCTGCGTTACAAAAACTTGGAAAGTATCACTCCAACCTATTGAAACAAAGGAGGAAAAACAATAGCCACGGAATA # Right flank : ACGTGTTCATTGTCTCAGCCTCTGCTGTAAACTATCGGCATGAACAGAAAAACCTACCCAAGCGATATCAGTCGCGAGCAATTTGCGCCTCTCCTCCCCCTGCTGGAAAGTGCCCGTAAACGCACAGCGCCACGTCAGGTGGACTTGTACGATGTCTTTTGTGCCATTCTCTACCTGCAACGCACTGGCTGCTCCTGGCGCGCTTTGCCGGGCGATTTCCCCAAATGGCGCACCGTGCATTCCTACTTCCAGAGATGGACTGAGCCACGCGAGAGTGGCATCAGCATCCTTGAGGAAGCATTAAAAAAATCAGGTAGTTGCGGAGCGCCGCAAGCAGGGGCATCATGAAGCAACCACTTTCCTGATTATTGATGCGCAGAGTGTGAAGAACACGGATACCGCCATGGAAAAAGGCTACGATGCGGGCAAGAAGGTTAGCGGTATCAAGCGGCATATAGCGGTTGACACGCAGGGTTTGCCGCATGCGCTTGCGGTAACGA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAAACGTCCCTGAACCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2482623-2482923 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU745373.1 Cardiobacterium sp. Marseille-Q4385 chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 2482623 34 50.0 32 G.ATTAACAGCGATGAA..C.............. TGTTGGATTGGGAGTAAAAGTCTTGCGCGGTC 2482689 34 91.2 33 T.......T..........C.............. ACGGCAAGGTATCCAACGACAAACGCCTTGCCT 2482756 34 82.4 33 A.....TA.A....G....C.............. TTGTGCCCTCCCCTCGCCATACTCGGCGTCAAG 2482823 34 100.0 33 .................................. CCCATTGCTGGATTTCACTTTTGAACTGGCTGA 2482890 34 85.3 0 ..............G....C..A.GA........ | ========== ====== ====== ====== ================================== ================================= ================== 5 34 81.8 33 CGCAGCCGCCTTCGAGCGGGTGTGAGTTGAAACA # Left flank : TGAAAAAGACCTGGCAGCGCTCTACAAAGATCGATTGATTGAGCAGGTCAACGAGCAGACATTCGGCAAGCAGTTCCATGCCCTGAGTGGCAAGTTGAATGTATATGACGAAGCGGGATTGAAGATGAAAAATGCGGGAAATATGCAGGCAGAAAACTGCACATGGTAAAACACATTAAATTGAAATGAAATATTGCGCAAAGTTGGCTGAACAGCTAAATTATGTCTAAATCTCAACGATATAGGAGAGAAATGTGACTAGGAAAAACCAGCACGTGGTTCCTCATGCGGATGGTTGGGCCGTAAAAGGTGAGGGCAATGGCAAAGCGACAGCCGTTTTCCGGACGCAGAAAGAAGCCACCGCTCGCGCGGAAGAAATCGCCAGACATCAAGGGGCGGACACCAAAATACACGGCAGGGACGGGCGCATTCGTGCCGGCAACAGCTACGGTCATGATCCTTGCCCGCCGAAGGACAAAAAATGATGCCTTTGGTATTTG # Right flank : AATTTTATGTGCTTGAAAAATCGCCCGCTGGGGCATGTATAGATGAATACAGGAGAGTTAAATGAACCAAATCCGCCTACACGTTTGGGGTGATTACGCCTGTTTTACCCGCCCGGAGATGAAGGTGGAGCGGGTGTCTTACGATGTGATGACGCCGTCGGCGGCGCGTGGGATTTTGTCAGCGGTACACTGGAAACCCGCCATGCGCTGGGTGGTGGATAAGATCCATGTGCTGAAGCCGATTCGTTTTGAGTCGGTGCGGCGCAATGAATTGGGCGACAAGATTTTAGTAAGCAAGGTCAACGGCGCGATGAAGCGCAACAGCGTCGCCGGTTTCTATACGCTGATTGAAGAAGACCGCCAGCAACGCGCGGCGACGGTGCTGAAAAATGTCGCTTATGTGATCGAAGCCCATATCGCGCTGACGGCACGGGCGGGCAAGGATGAGACGGTTACAAAGCATATCGAGATGTTCACACGCCGCGCGCGCAAGGGGCAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.09, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCAGCCGCCTTCGAGCGGGTGTGAGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2490616-2501115 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU745373.1 Cardiobacterium sp. Marseille-Q4385 chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2490616 32 100.0 34 ................................ CTTGCAAGCCACCGAAAACCCCGTGGGGCACCTT 2490682 32 100.0 34 ................................ CCATACGCTCCAATCGCTTGATGAAGGCACGACG 2490748 32 100.0 33 ................................ GTTGTAAATCTGTTGCCGCCTCTCATCCTGCAC 2490813 32 100.0 34 ................................ TTACTGAATCTATGAAGGTTTGGTCGTCTTCTAC 2490879 32 100.0 34 ................................ AATTGATGGTGTTGAAGAATGTATTTTTTGGTCG 2490945 32 100.0 34 ................................ CCGGTAACGGGTCGAATGGCACGCATAATATCGG 2491011 32 100.0 34 ................................ TGGTTATCCTTGCCGTCTCCTTTGTCGCCGTCCT 2491077 32 100.0 33 ................................ AGCGTAAAATCACTGACCGACTGGAAAAAAGTC 2491142 32 100.0 34 ................................ CGCATTCCGAAGGCACACCATCCGCCGAAAAGGC 2491208 32 100.0 36 ................................ GAGGTTATCTCGTCAACCTCAACCATTGGATCGTAA 2491276 32 100.0 34 ................................ ACGAAAACATATTTCTTATTTACTCCAATAAAAA 2491342 32 100.0 34 ................................ CGGGATTGGCTGATGCAGCCGCCACCGGCGCGAC 2491408 32 100.0 34 ................................ TTGCTATGCCGCACTTTTTGTTTGGCATGGAGGC 2491474 32 100.0 34 ................................ CGACCCTGCTTGTCCGCAGTGTCGGGAGGTCATC 2491540 32 100.0 34 ................................ TAATGTGCGTACATTGTAGTGCAAAAAATGCATT 2491606 32 100.0 35 ................................ CACCCCTTGCGCGTATAGCCACAAGCCTTGCGTGC 2491673 32 100.0 34 ................................ GTTTGTGACGGCGGTCACGTCCCAAGTATCGGCT 2491739 32 100.0 34 ................................ GTAACGACTGTTAGGATCATTGACAGCGTGTTGC 2491805 32 100.0 35 ................................ GCGCCAGTCATCGCGACTGCTCCGTGCCTACGAGA 2491872 32 100.0 38 ................................ CGACTTGTCCTTGTCGCCGTGGTTGCCACCACCACCGC 2491942 32 100.0 35 ................................ CGACCCCGCTTGTCCGCAGTGTCGGGAGGTCATCC 2492009 32 100.0 35 ................................ TGCCGGTAACTGTACGCAGTTTGTCGGCAATCCCT 2492076 32 100.0 35 ................................ CGTGGTGGGGATAATGCCCGTCGAGATGTACACGT 2492143 32 100.0 34 ................................ TTTTGGAACGACCCGGGGCGGGAAACGGGCACAG 2492209 32 100.0 36 ................................ CTTTTTTTGGGGAAGGGAGGATGGTGATTTGCGTTA 2492277 32 100.0 34 ................................ TTTTGTGGCGCATCGGCATCAACCCTAAATACAC 2492343 32 100.0 34 ................................ AATTCCGCTGGAAATGCCGAAGAAAGATAACGTG 2492409 32 100.0 35 ................................ GTTGCAGCGCCAGCGCCACAGTCACAGCATCAAAA 2492476 32 100.0 34 ................................ AGTGTTTCCACCGGGAAGCGCATATCCGGCAATA 2492542 32 100.0 34 ................................ GACAAATTGCGCAAATACGCGCCGATGAAACCCT 2492608 32 100.0 33 ................................ ACCGACCATATATATCCTGTCCCCGCTTGAGCC 2492673 32 100.0 33 ................................ GGAAAATCCCGGTAAAGATAAACCGCCGTTTAC 2492738 32 100.0 34 ................................ TTTATATCCACTATGATTGACTGGCTGAACATTG 2492804 32 100.0 35 ................................ TTGCAGTATGTCGGCCACTTCCTCACCGCCATGGG 2492871 32 100.0 33 ................................ AAGAGTGCGTCAAGTTGGGTTTGCAATTTCTGG 2492936 32 100.0 34 ................................ GACAAATTGCGCAAATACGCGCCGATGAAACCCT 2493002 32 100.0 34 ................................ AAAATGGCCGAAATGCTAGGAGTATCACCAGAAG 2493068 32 100.0 34 ................................ CGGGGTAGGCAGTTATCCGCTTGGTGGTACACCG 2493134 32 100.0 33 ................................ GTCTGCCGCCGTCCACGCCTGTTTGCGTACTTG 2493199 32 100.0 34 ................................ GCGCCATAGCCGGTGACCAGGCAGGCTTTGAGGA 2493265 32 100.0 35 ................................ ACGATGATGACCGCATCCGCGAGCAGATTGAGGCC 2493332 32 100.0 35 ................................ TGCTATAAAACCGGCAATTACAAAGCCTGCCTTGG 2493399 32 100.0 33 ................................ GTCTGCGCTGCCACTATCTCGAGGACTATCCGC 2493464 32 100.0 34 ................................ TGCTATGAAACCGGCAATTACAAAGCCTGCCTTG 2493530 32 100.0 34 ................................ GCTTTACGCGGGTCGATGTGGCGCGAGATTTCAT 2493596 32 100.0 34 ................................ CCTACCTGCATCCGCCGATGGCTGGGATGTATCC 2493662 32 100.0 34 ................................ TGGCCGTAGTTACCACCACCACGGCCACCTTTAC 2493728 32 100.0 33 ................................ TGCTATGAAACCGGCAATTACAAAGCCTGCCTT 2493793 32 100.0 34 ................................ CTCGATATATCGCTCAATCAGCTTGCGCACTATC 2493859 32 100.0 34 ................................ TGGCGACATTCGAATGTTAAGATTAACGTCCTTT 2493925 32 100.0 35 ................................ AGGGTTTTTCCCGCGCCGGGTGTCCCAGTAACCAG 2493992 32 100.0 35 ................................ TACGTCATCCAGCGGCTGGATACCGGCGAGTTTGT 2494059 32 100.0 34 ................................ TGCTATGAAACCGGCAATTACAAAGCCTGCTTTG 2494125 32 100.0 35 ................................ ATGTTAAAGCTGCTGGTCCAAACAGAACCTCTGTT G [2494128] 2494193 32 100.0 36 ................................ ATAGATGTGGCCATAAGCCATTTGGTAATGCAGGAT 2494261 32 100.0 35 ................................ CGGCGTGGCGTGATATTTATCCACACAAATCTGAC 2494328 32 100.0 33 ................................ TGCGCAGGCTGCGCGAGCACTACGGCATCACAC 2494393 32 100.0 34 ................................ CTGTTACTTCACGCGGGATTAAATGCTTAATCAG 2494459 32 100.0 34 ................................ GGGAGGGTTTGACAAATGATATTCGCACCGGCTC 2494525 32 100.0 34 ................................ CCTGTTTTTCGCGGTCATTTGAGGGAGTCACTGT 2494591 32 100.0 35 ................................ AGGGTGCCGTCTTTGTTGTAGAAATTGAATTTGAC 2494658 32 100.0 35 ................................ GGGAAGCTCTCCAATACTTTCGGCTGGGCGCGGTG 2494725 32 100.0 33 ................................ GCCTCATCGCGATGCGCAGCGCTCGCAACTGGC 2494790 32 100.0 36 ................................ GCAGCCCTCGACGTCGATGCCGCTAATGTTGGTATA 2494858 32 100.0 33 ................................ GAGTGGGGCAGTCATGGCGTCAGGGTAGGCGGG 2494923 32 100.0 34 ................................ GTTGGTGTAGCGATAGGTCTTGTTGCCCCCGAAG 2494989 32 100.0 34 ................................ CACCTCGCAGTTATTAATACAGCGGCGTACCATA 2495055 32 100.0 35 ................................ AAGTCAAAGGATGAGCAACCGGAGACGAATCTGCT 2495122 32 100.0 34 ................................ GCCCCGGCGCGAAACGCGGTGTCGTGTACGAATT 2495188 32 100.0 34 ................................ CGGTGATGGCTCAAACGGCACGCATGATTTGAAT 2495254 32 100.0 33 ................................ AAATCAACATACTATGCTGACTCCTCGCGATGC 2495319 32 100.0 34 ................................ GCTACGCGTGAGCAGGTGACCGACACCAATGGTC 2495385 32 100.0 34 ................................ GTCTCCTATCTAGGCCTCTCGCCTTATCGGCGCG 2495451 32 100.0 34 ................................ GGACTGCCGTTCGCTTTGTCCTTGCCGTCCTTGC 2495517 32 100.0 34 ................................ CCGGTGATGGCTCAAACGGCACGCATGATTTGAA 2495583 32 100.0 33 ................................ ATCCCCTTTGCATTCGGGCGGGATGTTCTTGGC 2495648 32 100.0 34 ................................ ACAACAAAGAAACCCGCCGCCGCAGCGATTACCG 2495714 32 100.0 34 ................................ AGCGTTTTGGACGCACCGGGGTGTCCAGTGACCA 2495780 32 100.0 35 ................................ GACAACGATATAGCGCCCCTGCTCTATTGGCAGAT 2495847 32 100.0 34 ................................ GTCTCATTTTTGAGACTAAGTCGGGTACTACTAG 2495913 32 100.0 34 ................................ AATCGCAACTAAACAACGCGCGGTGTCAAATGCT 2495979 32 100.0 34 ................................ CATCCGTTGCCCCGGTGGAAAATGGCAGGTTGGC 2496045 32 100.0 33 ................................ AACCCAAAATACACAATCGCGCACGAAACCTAC 2496110 32 100.0 35 ................................ ACCCTCTTTACCCTTGCCGTAGTCCTCAAGCTCTT 2496177 32 100.0 35 ................................ TATAGTAGTTATAGAGATACCAAAGGCTGCCCGGT 2496244 32 100.0 34 ................................ AACCATTACGCCACCATCCTTTCTTCCAACGACC 2496310 32 100.0 36 ................................ GGCTTGACCCAAGAGGAGGGCATACGGGTCGGCTCC 2496378 32 100.0 34 ................................ GGGATCGGGATCTCGTTTGGCCAAATACTCGTCA 2496444 32 100.0 33 ................................ GGCTGGCTGGCCTTTGCCCTACCCGCATCCGCC 2496509 32 100.0 34 ................................ ATCACTGTGGTCGGGGTCAAGCCGCTGCTCAATT 2496575 32 100.0 34 ................................ GGGTTAAACCCCGTCCGCCACATCAGATAGGTTG 2496641 32 100.0 34 ................................ GGGGCAGCGGTAGCGCTGGTCGAAGCCGGTTATC 2496707 32 100.0 34 ................................ GAGCAGTACTGGTATCCGTGGGACCCTGACAAGC 2496773 32 100.0 34 ................................ AAGGAGCAGGGCGGCACAGAAATCCTCACCCTGC 2496839 32 100.0 34 ................................ GCCGCGGCCAATGTGGGCGCGATGACGCTAGCGC 2496905 32 100.0 35 ................................ AGGCCTGTCCGCAACGCCCCCTGAACCTGGCTCTT 2496972 32 100.0 34 ................................ TGCCAACAACGCGGGGGGCTTGCCCGATTGACAC 2497038 32 100.0 34 ................................ ATCATCGCTTAATTTACGAGTTTTTATATAAGTC 2497104 32 100.0 35 ................................ TTCGACTGAGCCGCGCAGGTCGCCTCAAACTGCAT 2497171 32 100.0 34 ................................ CAGCCGCGCCTCGCGGATGAGGGCGCGCTGGTAG 2497237 32 100.0 33 ................................ GGCGTACTGTGATAGTGCTCACCACACGACAAG 2497302 32 100.0 35 ................................ GAGTCTTGGCAATGGTTGCGAGTGGTTGCGATCAA 2497369 32 100.0 34 ................................ TCTTTGCAACTCCCACCTTTGACCGTACCGCCAC 2497435 32 100.0 35 ................................ AGCGTTTTGGACGCACCGGGGTGTCCGGTAACAAG 2497502 32 100.0 34 ................................ TCAGTGAGCGGTGCGTGGACAATCCCCGCGCTAA 2497568 32 100.0 33 ................................ AGCATGCTCTTGACCATCTTAAAGCCGAAGGTC 2497633 32 100.0 36 ................................ TTATCCGGCCATCTCGGCCACAGCCAAACAGCCGGA 2497701 32 100.0 35 ................................ ACAGCATCATGATGCGTAAATTGGCGACTTACGCC 2497768 32 100.0 34 ................................ ATGGCGGGTGAAATGACGGTTGAGGAAGTGCTTG 2497834 32 100.0 34 ................................ ACGTGTTTACACGTTTACAGACAGCGGCATAAAG 2497900 32 100.0 35 ................................ TGGACTGTACGCATTGAGGACGGGGGAAGTCTTGC 2497967 32 100.0 34 ................................ CTTCTTTACGCGACGGTCCTCCATTTCACAATTA 2498033 32 100.0 34 ................................ ATGACAGATTAGGTGAATTAGAGGATGCGTTATC 2498099 32 100.0 34 ................................ CATCCGTTGCCCCGGTGGAAAATGGCAGGTTGGC 2498165 32 100.0 34 ................................ CCTGTCAAGATAACCACAAGCTTTGGCAGCAGAT 2498231 32 100.0 33 ................................ TTGCATTTAACTGAGCACAGGTGCGTCAGTCTC 2498296 32 100.0 34 ................................ TGCGTCCCTGCATACCAAGAATACGCGTGTTCCG 2498362 32 100.0 34 ................................ TTGATTTAGATGTGAGTGGCAGAAACGTAAAGGC 2498428 32 100.0 35 ................................ TGCACGCGCTCAATCGTTGACAATGTTTTGAAGCT 2498495 32 100.0 35 ................................ GGCGCTCACATAATAATCGTAGTAATGTCTGGGAA 2498562 32 100.0 38 ................................ TGACCATGACCCATGAAGAGGAACAGCAGCGCTTGGCG 2498632 32 100.0 34 ................................ ACGCATGGGGACCTCCTAGATCCGTTTGAGTGAT 2498698 32 100.0 34 ................................ ACTTTGTAAATTTACCTATGATCGACTGGCTGAA 2498764 32 100.0 34 ................................ AACCATTCGCATCTGTCACTTGCTTCCGACAAAG 2498830 32 100.0 35 ................................ ATTTATCGAACATGCGGGGAAAATCGATATGACGA 2498897 32 100.0 35 ................................ GTAGTCAATGCTGCCCTCGATATTGCTGCCCTCAA 2498964 32 100.0 34 ................................ ACTTTGCAGCGCCTCAAGAGCGACGCGTCCTCAT 2499030 32 100.0 33 ................................ GGTTTATAAATTTGTGATTTATGAACCGTAAAC 2499095 32 100.0 34 ................................ AGGCTGCGTAGGATTGTGAGGTCGTGGGCAGTTG 2499161 32 100.0 34 ................................ GCGGTTGCGTGGAGTATCTGAGTGGATGTCTCGC 2499227 32 100.0 35 ................................ CCGGCTTGCGCGGATAAAGCAAATGGCAATAACAG 2499294 32 100.0 34 ................................ GTGATGGACATCTACGACCATCTGCGCGGCGTCC 2499360 32 100.0 34 ................................ GTCCTTGCGGATGTGCCCCTGCATCTCCTTGATC 2499426 32 100.0 34 ................................ GGCCGCCGCCGCCACCCCCCCGCTTGCGCGTGTC 2499492 32 100.0 33 ................................ TGTCAACAATTTCTTTTTTATTGGAGTAGATAA 2499557 32 100.0 34 ................................ TGAAGAACTGACGGATGCTCAAAACACGATTGAG 2499623 32 100.0 35 ................................ AGACTGGGTACGGCTCGAATTACAAGCCCGCCCAA 2499690 32 100.0 34 ................................ CACCTCGCAGTTATTAATACAACGGCGCACCATA 2499756 32 100.0 33 ................................ CAACAAATTTTTGGAGCTGACGTCCAATTCCAA 2499821 32 100.0 34 ................................ AACATCATCATCACTGACAACCGCATCCCCCGAA 2499887 32 100.0 34 ................................ AACATCATCATCACTGACAACCGCATCCCCCGAA 2499953 32 100.0 34 ................................ TTTTTGCTTAGGTGGTAACTGCTACCACCTTTCC 2500019 32 100.0 33 ................................ AATACCACAATTCCTCAACTCTTCCGGCAGACC 2500084 32 100.0 34 ................................ GATTACTTGTCGCGGCACCAAATGCTTGACAATA 2500150 32 100.0 34 ................................ AACGCGTAGGCGCTAATGATGATAGAAAGGAAAA 2500216 32 100.0 36 ................................ AGCCTTGACGTTGATACAAGCGGCAAGGCCCCGAAA 2500284 32 100.0 34 ................................ TTTATAGGCGGTTACTGCCTGATAAGCGCATCAT 2500350 32 100.0 36 ................................ CCTATCTAGGTCTCTCGCCTTATCGGCGCGAGTCAG 2500418 32 100.0 35 ................................ TTCCATAAATGTTACTTTTTCAGCAGTCATAATCA 2500485 32 100.0 35 ................................ GACGGCTGGCACAAAATGGACGATATCGAAGGCGC 2500552 32 100.0 34 ................................ AATCCGCCCGAGGAGTTTGCCGACTACAGCATTA 2500618 32 100.0 33 ................................ TTCAGCAGTCATATCAGCTCCTAGTGCTGTTGT 2500683 32 100.0 34 ................................ TTTATAGGCGGTTACTGCCTGATAAGCGCATCAT 2500749 32 100.0 36 ................................ CCTATCTAGGTCTCTCGCCTTATCGGCGCGAGTCAG 2500817 32 100.0 35 ................................ TTCCATAAATGTTACTTTTTCAGCAGTCATAATCA 2500884 32 100.0 36 ................................ TCCGAGTCCCGGCACCGGGGCTTTGACATCTACCTG 2500952 32 100.0 33 ................................ GCGCGGTGTACGGTTGGCGAGGTGGTGTAACTG 2501017 32 96.9 35 .............A.................. CCGAACAACATCTGCATCATCAACGGCACGGACAT 2501084 32 87.5 0 ........T.........T....G.C...... | ========== ====== ====== ====== ================================ ====================================== ================== 159 32 99.9 34 GCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Left flank : GTACGGGAGACGGTCATGATGATGCTGATTACTTACGACATTTCGCTCGAAGATCCGGAAGGCCCGGCGCGATTGCGACGTGTGGCAAAACTTTGTCAGGATTATGGCGTGCGTGTGCAATTTTCCGTTTTTGAATGCGACATCGCGCCTGATCAGTGGGTAAAGCTGAAAGCCGGGCTGCTTGATATTTTTAAACCCGAGACGGACAGCCTGCGCTTCTATCATCTCGGCAGCAAATGGCGGGGCAAAGTGGAACATCATGGCGCGAAGCCGGCCGTGGATGTATTTAAGGATACGCTGATTATTTAGCGCGCTAACCATTGGTTCTCATGAAAAAGTGGGCAAGTTAGCGAATGCGGCAGTTCTTTAATAACAGGGTTATTTATAGGGCTGTATGGCGCAAAAGCGGGCGCTATACTTTCCAAACTCTTTGACGTCGGAATGAGTTAGCGAAAGGCTATTGGTAATTAACTGATTTTTCGCGGATTTTGATGCAGAGA # Right flank : CAGATACCATTTGAGAACAGGCATTGTCCGATTTTGCGGTGAATGATTAGCGTCGCTAAGCGGGGAAACATCGGGTTTACGAAACGCTGCGGGCAACTTCTCCTGTAGTGCATCCGGCTGTCGCCGAGGTTGCACATCGTCATAGTGCCGAAAGTGCTTTCCGCCCGTGCCGTGCAAAACAGCGTATGGGGCAGCATAGGAAACGAGAGCCGCCGCCTGCTGTGGCTTCACTTGACCCCCGCTGTATAATGCCGCCCCTTCCCATTACCCAGACACTACGCCCATGCTTGAGCGCATTCGCAATTTTTCCATCATCGCCCATATCGATCACGGCAAATCCACCCTTTCCGACCGCTTTATCCAGATGTGCGGCGGCCTGTCCGAGCGCGAAATGGAAGCGCAAGTCCTTGATTCCATGGATTTGGAACGGGAACGCGGCATTACCATCAAGGCGCAAAGCGTCTCGCTCAATTACACTTCGAAGAAGGACGGGCAGACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //