Array 1 480009-473612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDK010000002.1 Clostridium algidicarnis strain CM030 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 480008 29 100.0 35 ............................. CGGGAAAGGGTACACGCATAGCAAAACAATAGATT 479944 29 100.0 35 ............................. GAGATGGAAGCTAAGAAATTAGCAGTTATAATTCC 479880 29 100.0 36 ............................. CGGTGTTAGCAATTGGTATACAGTGTACTATAAAGA 479815 29 100.0 36 ............................. TAGAAGATAAAATGTATCAATTAAGTTCTCATATTA 479750 29 100.0 36 ............................. TGGTATCACTACATCTTACTGTATCATTTAACCCTT 479685 29 100.0 37 ............................. CAGATATTATGGTAGATAGGTTTGAATTTTTATACGG 479619 29 100.0 37 ............................. GTTAAATTAGAAATAATATAGGAAAGAGGGTTTTCGA 479553 29 100.0 35 ............................. ACAGTAGATTTATTCGCAGATACAGTAAGCACAAC 479489 29 100.0 35 ............................. ATGCAAGATTTGTTCAAAATAAAGGCAATTATAAG 479425 29 100.0 36 ............................. GCAAGTAGTCGCGGCAGATAGCAATATGGATATAAG 479360 29 100.0 37 ............................. AGAAGTGTACACTAACATGGGGGTAGATTACAGTAGA 479294 29 100.0 36 ............................. AAAAACATCAAAAAGGGGTGCTATATGATAGATGAA 479229 29 100.0 36 ............................. TATACATGATTGTAAATGAAGGCGACATCTTTCGAA 479164 29 100.0 37 ............................. GCAGTGGACAAAAACTTAATTATGCAAGATTTAAAAG 479098 29 100.0 37 ............................. CTAGAAGTTATTTCATGTTTATTTATATCAATATCTT 479032 29 100.0 35 ............................. TACATTAAGGCAATTAGAAATGTTCGAGGTGAGAT 478968 29 100.0 36 ............................. TTTAATATTCTTCTTTGTATTCTTCTTTGTATCTTC 478903 29 100.0 36 ............................. TTTATATTACAAATCTTCGGTGTGCTAATTAATACT 478838 29 100.0 38 ............................. CTTTAAAGCATTAGGTAAAGTAATAGTAAAACCATCAA 478771 29 100.0 34 ............................. TCTCTAGAATTTATTAAATTACTTATTTCGTCAA 478708 29 100.0 37 ............................. ATAAAATCTATAAAATTATCTAACAACTACATTGAAG 478642 29 100.0 36 ............................. CAGTAACAAAGGTTACTCTTGCGGTAGATAGATATA 478577 29 100.0 37 ............................. TATAAAAATTGGTACACTTCTTTCAAATATGGTACTC 478511 29 100.0 36 ............................. GGTAAAAACTTTAGAGCTTCAGAAACAGATACTTGC 478446 29 100.0 36 ............................. GCAATAGAAGTGGACGTTGCTTAACTATGAATGTAG 478381 29 100.0 36 ............................. TCATTCTAAGATTATTTACTTTCAATTTATCCAAAA 478316 29 100.0 35 ............................. CATGTAATTAAAGTAACAGAAGGCATTGGGAAATT 478252 29 100.0 35 ............................. ACAACAACACTGCCAAGTTTATCAAACTCTGTTTG 478188 29 100.0 37 ............................. TCACAAAGGCTGCAATAGACTTTGAGTCGGCTTTTGC 478122 29 100.0 36 ............................. TCTTAATCAGGCTAAGAGTTTTGATACACTAAAAAC 478057 29 100.0 36 ............................. GGATGGGATACAGATGATACATTCAAGGTGAGATTG 477992 29 100.0 37 ............................. GTTGGTTGATGCGGGGATAGACATAGGTGAGAAATTG 477926 29 100.0 35 ............................. GAAAAATTATTAGTTCAGGTGAAATCTCATGATGA 477862 29 100.0 35 ............................. GAAAAATTATTAGTTCAGGTGAAATCTCATGATGA 477798 29 100.0 36 ............................. CTAGATTTCATGTAAAATACAGTCATTTTGCTATTC 477733 29 100.0 37 ............................. ATATAAATTTTGGCTGTAAATCTGTTTGTAAATGTGG 477667 29 100.0 36 ............................. ATGAAAAAATGTACCGGTATTATAAAGGCGATACTG 477602 29 100.0 37 ............................. CGCTTTGGGTATTACTTAATCCCGTTTCAGTGTATTC 477536 29 100.0 35 ............................. AGATACACCTAAGCCTTTTGCAAGTTCCGCTTGAG 477472 29 100.0 35 ............................. TTTGCACTTATTTTAGTGTAACTCCCATCAGCGTG 477408 29 100.0 36 ............................. TTCATTTACTAGACATAAACAATAAATTTTAGCTAA 477343 29 100.0 36 ............................. GTGTCTGTATTGGTCTTTGTCTTTATTCCTATTTCC 477278 29 100.0 36 ............................. GATAGGGGCGCGGTAGGCATAATCACAGAGGAAGAT 477213 29 100.0 35 ............................. GACAAACACCCTATGATGTCCGATTTAAGAGATAG 477149 29 100.0 36 ............................. TTAATTAATTCCTTCTTTCTTTTTATTATTTTTTAT 477084 29 100.0 35 ............................. TTAGCAGCGGCAATATTTGCATATAGTCAATTATA 477020 29 100.0 36 ............................. AAAGGATATACAAAAAATTAACGAACTTTATGACAA 476955 29 100.0 37 ............................. CCTTGTCTATGCTATTTGCAAATGTTATCACATCAAT 476889 29 100.0 36 ............................. CAGATTCAATTTATCAATTTATGGTTTTATTTTGTA 476824 29 100.0 36 ............................. CAACATAAATTGAGCGAAGACGGGAAAAGAATAGTC 476759 29 100.0 37 ............................. TGTAGTTTATGCAATGTAAACTATAATTAAAAAATAG 476693 29 100.0 35 ............................. GTGTATTTCCCTTTACTTTCTGCATTATTCTGTCC 476629 29 100.0 36 ............................. TTGGATATCTAAACGCAGAACTTATTAAAGTTGGTG 476564 29 100.0 36 ............................. ATGAAGGATTCATATGATTATTATATTTTTAGATAT 476499 29 100.0 36 ............................. ATGGATAATAAAATACCTATATGCTGCGCTTACTGC 476434 29 100.0 36 ............................. TTGCTACCACTAGCCTACATAGGGGTACACGTTTTT 476369 29 100.0 37 ............................. CAAAAAAGGGTTCTTTTATTACATTAAAAGTATATGA 476303 29 100.0 35 ............................. GTGCAAATTGGGCTTTTAACGAAAAAGTAAATTAT 476239 29 100.0 37 ............................. TGCTTCAAAATTTGAGAAGGTTTGTTTATTGGTTAAA 476173 29 100.0 36 ............................. GTAAAGTAAATATCATAGGTATTAATTTTGGCGGAG 476108 29 100.0 37 ............................. GCGCATAGAGCACTGTTAAGAAGAGAAGGGTTTGTAC 476042 29 100.0 37 ............................. TTCTTTATATCTTTTATATTAATTCTAAATCTATCTT 475976 29 100.0 36 ............................. ACAAAAGGTTCTATATACCCATTAGTGGTACTTTTA 475911 29 100.0 34 ............................. ACTCTTTCTGCTGGAAGTCCTATTTCACTTGCAA 475848 29 100.0 37 ............................. CTTTCTTTGCATAATTCCAATTTAAAAATTTAACTTT 475782 29 100.0 36 ............................. ACTAAATAAAGAACTTAAACTAAATAAAGAACTTAA 475717 29 100.0 37 ............................. ATTTAAAAATTTAACTTTGAACTGCTCCAATGCTCCA 475651 29 100.0 35 ............................. TCTACTAACACAGTAAAAGGCAAAAACGACTATGA 475587 29 100.0 36 ............................. CAACATTTTGTCTCCACTAAGTCCCGCTTTTATTAA 475522 29 100.0 36 ............................. AGCAATTAGTTTATCTAGTGGGCCATCTCTTACATC 475457 29 100.0 35 ............................. TAAAATAGGTGTTTTTCTACTGTTGTTGTTATTGT 475393 29 100.0 36 ............................. TCAAAAAGTCTATCTTACCCATGCCTGTAGCACTTT 475328 29 100.0 36 ............................. TGCTCAAACTATGGAAGAGATTAAAGATATGCATGC 475263 29 100.0 35 ............................. AGAAAGGTATTGAGTCATCGTCCGCTGGTGTAAAC 475199 29 100.0 37 ............................. CGCATTTTAAATCTTCAAATTTCATATTTTTTTACTC 475133 29 100.0 37 ............................. AATTTAAACGAAAGACTAAAAGCATTAGAAATGGCTA 475067 29 100.0 35 ............................. AGGTATTACAGGCTCTTTCTTAGGCATATCAGACC 475003 29 100.0 36 ............................. GTTTAAAGCACTTAAAGAAGACAATGAGATAGTAAA 474938 29 100.0 37 ............................. ATGGAACTGGTAAGGGTAAAAACACTCAAATTTATTC 474872 29 100.0 36 ............................. TGAAGTCAGCATGGACGAATGTATTAACAGGAATGT 474807 29 100.0 35 ............................. CAGATGGAAGAGACGCCATTTATTCTGGGCTAAAA 474743 29 100.0 37 ............................. ATCATATTACTCACTTTATTTATATTTATTTCGTATT 474677 29 100.0 36 ............................. ATATAATGGATATATTAATTGCTAAAAGTAGAGACG 474612 29 100.0 36 ............................. TTCCATATCTCTGTAGAATGCATCTATCGGCATTGT 474547 29 100.0 37 ............................. TGCTGTATTTTTATCTTTTTAGCTTCTGCTCTTATTT 474481 29 100.0 36 ............................. TTAAACCGACCTACTTTGGCAGGCATAGGGGAACAA 474416 29 100.0 37 ............................. GTGACTGATGGGTGGGTTACACAAGATGTGACAAAAG 474350 29 100.0 35 ............................. ATTAATGGCTTAGCATATTCGAAGACAGGAATCGG 474286 29 100.0 35 ............................. ACAGTTGACCATAAAGATGGAGACAGGGTCAATAA 474222 29 100.0 36 ............................. AAAGTAGTAATATAAGAGAGGAGATTTGATTTATGA 474157 29 100.0 37 ............................. CAAATAATAACATCAGCTATAGAAATTATAGATACTT 474091 29 100.0 35 ............................. TTTCTAATACCTTGCTTTTGGTGCAACGCTTGTGC 474027 29 100.0 35 ............................. GAAAACAAAATGACTGTATTTTACATGAAATCTAG 473963 29 100.0 35 ............................. TTGCTATCTTATCTTCGTATCTGTGGTCATACATA 473899 29 100.0 36 ............................. TAAAGATGAGAGGAACGAGTGTCAGATATGCAAAGC 473834 29 100.0 35 ............................. ATATCAATTACTCTCATTCTAGTAGATACTGGGAC 473770 29 100.0 36 ............................. TCTGTTTCACCTTCTTTAGCTTCAAAAGGTGTTCCT 473705 29 100.0 35 ............................. ACAACTATGGTTATATTAGGTAATGGAAATGATAC 473641 28 79.3 0 ............G...-......T.T.GT | A,C [473619,473631] ========== ====== ====== ====== ============================= ====================================== ================== 99 29 99.8 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : TGCAGAATTTATATTTGAAAAAGATGATAATTTTGGAATGTACAATGATTATAAGGTTGAAGGGAAATCCATACATTGTTTGTTAATTAGAAGTAAAATAGATAAGTCTTCTTTTGCATTTGGAATATTTGTACTAAGTGCTGATAAAGAGTAATTATAATTCTATTTTAGTGCGTATTCTTTATAAAATGCGTCGCTAAGTTATTTGTAAATTAGAAAGCTTGAGTTTGACACAATGCTAATTAAGACAAACTGGAGAAAATGGCTATAACAATTGATATCAGAGGGATAGAGTAGGTTTTATACTCTGTCCTTTTTTATTTTTCTTCTTTGGGTTTGTCTTAAGGGTTAATTTAGTACACTTTTGTAAAACTAAGAGATCAGCTTAAAACTTGATTAAATGAAGATGTTAAATAAAAGTATATCAAGGCTCTAAAACAATTCTAAGGGGTTTTATATGTTTTCTGGTGCTAAGCCTTATAGATTTAAGTTACAAGCTT # Right flank : ACATTAATCTATGAAGAGACCTTTGGTAAAAGCTATAAAGAACTTAAAGCTGATTGAATTAAATACCTTAAAGATAATATTAAATATATAGAATTGATACTCTGATACAAAACATTATTATGAAGAACTATAATTTGTTTTTTTATTGCTCCCTTTTTTTATGATCTGAACATTCCCTCCATCTTTTAAGAGGTGGGGATTATTTTTTATAAGAAAGTTTACTATTATTAATAGATATTCTAACCTTATTAAGGTAAGATGAAACCCAAAATATTATTATTATGATATAGTTAATTAAGAACACTACATAAAGAAAAGAGGAAAAATCATGTCAGAATGTATATTTTGTAATTACAATAAATCAGAGATAATAGCAGAAAACAAATACACCTTTGCTATCTTAGATCACTTCCCAGTAAATGAAGGTCATTGTTTAATCATACCTAAGAGACATTTTATGAACTTTTTTGAGGCAAGTGAAGAAGAGGTTAAAGCCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11019-18130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDK010000015.1 Clostridium algidicarnis strain CM030 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11019 30 100.0 36 .............................. AGAGAAACACATCTAAAATAATAGATTTAGGAGGTA 11085 30 100.0 34 .............................. TGTGCCATGTGGTATATTATTATCCGCCCTGTAG 11149 30 100.0 36 .............................. AAAAATCTATCTTATCCATGCCTGTTGGACTTTTAT 11215 30 100.0 36 .............................. TTATTGTGTAGGCTAATATCTCCATCTTCCCACTCC 11281 30 100.0 33 .............................. GTAGTAGGACTTGCACCTTTTGCACCTTATATA 11344 30 100.0 35 .............................. GGTACTTTAGCATTGCCTTATATTTTACAAGGCAC 11409 30 100.0 35 .............................. TTAGATTTTGTATATCTCTTTTAATATTTTTGTGC 11474 30 100.0 36 .............................. TTAGTTTTTTACCCCCTTACTTGTAAGACCTACACC 11540 30 100.0 36 .............................. AATAAATATTTTACTATACGATGGTTAAATTCTATT 11606 30 100.0 35 .............................. TCATGTATGGTTAAACATATATACATATCGCAAGT 11671 30 100.0 35 .............................. TAAGAATCTTTTAAATTAGCTAAATCTTTTATTAT 11736 30 100.0 37 .............................. GGTACTTTAGCATTGCCTTATATTTTACAAGGCACAG 11803 30 100.0 36 .............................. TTAATAATATTATATCCAACATATCTAACAAATATA 11869 30 100.0 37 .............................. CCTGTTTTCCCAAACGCTACGCAATTCAAAAAGTCTG 11936 30 100.0 35 .............................. CTTTATCTTTTAGAAATGAAGGAACAACTATAATT 12001 30 100.0 35 .............................. GGTACAGCCACTCCTGCTCTAGCTGCATTCTCTAA 12066 30 100.0 37 .............................. TATCTTTTATACCTCCTATTATTCCATTTTAATAAAA 12133 30 100.0 36 .............................. ATGTCGGTACCAGCTAATAGAGAATTAACATCCTCA 12199 30 100.0 34 .............................. TATTGTGTGCCATGTTTTATGTTGTTATCTATTC 12263 30 100.0 35 .............................. AAGTTTAACTGAGTTAACTTAGCTTCGTAGTCCTC 12328 30 100.0 36 .............................. TTAATTTATTCCCCTTTTTTCTTTTTTGCTAGGTGT 12394 30 100.0 35 .............................. CAAGTACCAGAAGGTACTATATCAAAGGATACTGC 12459 30 100.0 36 .............................. ATCTGAAAAAGAAATAACTTTTAAAGTTGATACTCT 12525 30 100.0 36 .............................. TGAAGAAAGAAGCAGAAAAACAAAGAAAAATCATTG 12591 30 100.0 36 .............................. AATGGAATCATGGGTATCTTGGGCGAATTCAGCTAC 12657 30 100.0 35 .............................. AACACAACATGGCATCCTCTTCTATAATCTCAAAT 12722 30 100.0 36 .............................. CCGTATTTCAAACTTCTTGATACCCATGTAAGCCTT 12788 30 100.0 35 .............................. CATTTTTAATCATATTGGCGCATATACTGCAAGGT 12853 30 100.0 36 .............................. TTTTCTTCTCCACCCCATTTATTGAATCTTATATGA 12919 30 100.0 35 .............................. AATATTGCACCATTTGCATTTTTAGGTAGGCTATT 12984 30 100.0 36 .............................. TTTCCTATAAATTACAAAGGCAAAAAAGATTTTGAC 13050 30 100.0 36 .............................. AAAAATCTATCTTACCCATGCCTGTTGGACTTTTAT 13116 30 100.0 34 .............................. GAATTCCATTGTAATTTTTTATATATTCCATCCA 13180 30 100.0 35 .............................. CAAAGAATCATGTATGTAAAAGATAAAGATGAGAT 13245 30 100.0 36 .............................. AAGAAATTGTCCTAAATACAAATACAAATTAGAACA 13311 30 100.0 34 .............................. TGGCCGCTGCTAGGTTTAGCATTTCCTAAGACTT 13375 30 100.0 36 .............................. TTACTAGGGCGGTTTTCCCCATACTTGGTCTTGCTG 13441 30 100.0 36 .............................. TTCGCTTTATTATAAAAGTCTTTAGGATTTAAGACT 13507 30 100.0 34 .............................. TATTCCATTCCGCCATCTTGATATAAAACTACTG 13571 30 100.0 36 .............................. TTCTTGGCTTGTCTTACATAGTCATTTATACAGTCC 13637 30 100.0 35 .............................. AACACACAGAGATAATATTAATAATGCATTTATAG 13702 30 100.0 35 .............................. AATAAATCTAAATTATGTTGACGTTCCTTTTGAGA 13767 30 100.0 34 .............................. ACTTTAGCCATAAGGGAATTATATTCTTCTATAG 13831 30 100.0 35 .............................. TATGTTCCACTAATGGCATTATTTCTAATATCTTC 13896 30 100.0 35 .............................. TATGTTTTAGGTGGTAGTGTTAAACACTCCTCTTT 13961 30 100.0 36 .............................. AAATAGCATGGAATAAAATATCCAATTATATAGAAT 14027 30 100.0 34 .............................. TACAATGCAATAGTTAGACTGGCCATAGATGATG 14091 30 100.0 35 .............................. AAAGATACTTCTAAAAAGATATTTAAACAAAAACG 14156 30 100.0 37 .............................. GCATCCTTACTACAGGGTTTGGGTGGGGATACTAAAA 14223 30 100.0 36 .............................. AGAGGACATCTGAGCTTCCTAAACGATGATATTCTC 14289 30 100.0 36 .............................. GAGGACATCTGAGCTTCCTAAACGATGATATTCTCA 14355 30 100.0 37 .............................. AATAATTGTTCGTATTTGCATTTGCAATTTCTTCATC 14422 30 100.0 37 .............................. TAATTAAAACCACCTTTTAATTTATTTTAGAACTTAT 14489 30 100.0 35 .............................. GTTTTAATATCTATTTTGTATATCCACCCATTAAT 14554 30 100.0 35 .............................. GGGTTAAAACTTAAGGTTAATCTTTTAGTTACCTT 14619 30 100.0 36 .............................. ATACATTTTATAAATAGTTGCTACAAATTTTATAAA 14685 30 100.0 34 .............................. TCTTCCGGTTTTCCGATCTATAAAGAGAATCCTT 14749 30 100.0 35 .............................. GATTTTATTAATGAAGAAAGTAACTGGCTTGCTCC 14814 30 100.0 35 .............................. GCATTGTGACCATATCATTTTGCTTCATTGTTAAT 14879 30 100.0 36 .............................. TGCATTATTGTATTTGCATTATCTTTATTATTATAG 14945 30 100.0 37 .............................. TAAGTTTTATCATTCTCTTTTAGTATAGCTTGTATCT 15012 30 100.0 36 .............................. TCTGTGAAAGTTTCTATTAGAGTTCTCAATATGTTC 15078 30 100.0 37 .............................. TATTGGCTCTTATTAAGCTTGTCCATGTTATCTATCT 15145 30 100.0 36 .............................. TTTAAGTTCATTCTTGTACCTCCTATTCTGCATCTA 15211 30 100.0 35 .............................. TATTTTCACCTCATTACACCAATCAGCTGATATTC 15276 30 100.0 36 .............................. CATATATGTACAATCCTTTTATTGTACATATAAACC 15342 30 100.0 36 .............................. ATAGCTCCACTCCATGCCTTGAAACTTGTTATTGTT 15408 30 100.0 35 .............................. GAATGAATTTGATATATGGTTTAAAAATGTACAAA 15473 30 100.0 36 .............................. ACATTGATAGTTTTAATAACTAATAGAAACAATTAA 15539 30 100.0 34 .............................. TTTTCTATTGTACAATCTCCTAAGTAATTCATTA 15603 30 100.0 37 .............................. ATAGGATAATAAAATTAATACCACTTGAAAGTTCCAG 15670 30 100.0 35 .............................. AGGCTATCAAAAACCATTACAGAAAGATAAGAAAG 15735 30 100.0 36 .............................. CATATATGTACAATCCTTTTATTGTACATATAAACC 15801 30 100.0 35 .............................. TATGCAATTTGTGTATTAGTGTCTAAGATGTAATT 15866 30 100.0 36 .............................. CCTTTTGTATACACTAAATCGAAATCAGTTAAATTT 15932 30 100.0 36 .............................. CATATATGTACAATCCTTTTATTGTACATATAAACC 15998 30 100.0 36 .............................. ATAGCTCCACTCCATGCCTTGAAACTTGTTATTGTT 16064 30 100.0 35 .............................. GAATGAATTTGATATATGGTTTAAAAATGTACAAA 16129 30 100.0 37 .............................. TGTGAACGGAGATTTTGAGTTGCATTGTCCATTAAAT 16196 30 100.0 36 .............................. CTTCCAACAAATGTTTTTCCAAGGCCCATATCTAAG 16262 30 100.0 36 .............................. CCTATTCGAACTGTAAATTCCAATCCATAAAACATG 16328 30 100.0 36 .............................. GAAGATAGGCTTTGAATTAAACCATGTTTTGCACAT 16394 30 100.0 37 .............................. TTTGGACAGTGGAAACAAAAAAGTAAACAAGGTTTTA 16461 30 100.0 36 .............................. CCGTCTAACTGGCCTTGCACATTGGCAAACCATATA 16527 30 100.0 37 .............................. GAAAAAATGGTTGAATCTGTAAAAGTCAGAGTTGAGG 16594 30 100.0 37 .............................. TATAGCACCCCTTTTTGATGTTTTTAGGCGAAATAAA 16661 30 100.0 34 .............................. ATAATAAAGGAGGTTATATTTTGGATAATAACAT 16725 30 100.0 35 .............................. TATATTTCTTCTATTTCCGTTATTCTCGTGTCAAT 16790 30 100.0 35 .............................. TATAGATATTTGCGCAAACGCAGAGGACCAGGCAA 16855 30 100.0 36 .............................. TTAAGTGTAATGAACCCATTGATGGTAAAGACAACT 16921 30 100.0 36 .............................. CCTTTTTCAGTTTCCTTTTTTAAGATGATTGGACAC 16987 30 100.0 36 .............................. CACCGTGGGTTCGCCAAGGACTTTCTAACTTTTTTT 17053 30 100.0 36 .............................. AGAAATTCCGGATCTTCAGGGGGCTACTTGTAGAGT 17119 30 100.0 35 .............................. TATAGTACATAATACTATACTATCTAATATTCATT 17184 30 100.0 35 .............................. ATTATATTTGAATTTGAGTTGGTTTTAACACTAGA 17249 30 100.0 36 .............................. AACCTATCTACCATAATATCTGTGGTATATACTTTT 17315 30 100.0 36 .............................. TTATTGTTTGTTACAGAACTTGGATTGTTACTGTGG 17381 30 100.0 37 .............................. TTCCTAAACTTTAATTAATATATTTTTATTATTAATC 17448 30 100.0 35 .............................. TTTTTACCCCTCCATCTATTTAGCGTTTAAATAAC 17513 30 100.0 36 .............................. CTGATTGAATATGCTAAACCCTCTTTCATAGTTTCA 17579 30 100.0 36 .............................. ATGCTAACATTGGATAATGTCTTAAATGTTTCTTAT 17645 30 100.0 35 .............................. TATCTTTCAACCACTGTTAGCAACTCTTCTAGGCT 17710 30 100.0 36 .............................. AAATTAGAGAAGGATAATGTAACTCCACATTTTGAC 17776 30 100.0 36 .............................. CCTCTCTCCATTGCGCTAATATAGCTTGCGTTAACA 17842 30 100.0 35 .............................. GATGGAAAACCAATAAGTATTGGAGCATCTATAGC 17907 30 100.0 36 .............................. ATATGCCTTTAACTGTTGTTATATTGTTTAAATCTA 17973 30 100.0 34 .............................. TTACTAGAGCGGTTTTCCCCATACTTGGTCTAGC 18037 30 100.0 34 .............................. AATTTATTTAAGCACCCTTCCACGTATCCTTTTA 18101 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 109 30 100.0 36 ATTGAACCTTAACATGGGATGTATTTAAAT # Left flank : AAAATATTTATCTCACTTTCAAAAATCAGTATTTCGTGGTGAAATAACAAATTCTAAGTTAATACTTTTAAAAAAGGAAATTGAAAATATAATTGATCCTTCCACAGACTTTGTATGTATTATAAAGCTTATGAATGATAACATCTTTGAAGAAGAGACATTAGGCAATGGTGAATCCACTGGTGAAGACTTAATAATTTAACATTCTTTAAATTATGATAATCATGTTGTAGTTTCAAGTTATTGTCATAGCCATTACCTTCTTTTGTACATTAAGCATAGCATCATAAATCATCATATAAAACTTTCTTATTTATATAAATAATCATCCCAGCTAATTTATACGTCCAAAGCCATAAGCCCTAATGAATCCAACCTTTCAGGGCTTATATACTTAATAAATCGATAATAGATATTTTCCCTGGGATAAATTCTTCAGAACCCTTTAATAGGAACGATTTAGTGATATAATAGAAATAAGAAATGGCTTAAATGCTGTG # Right flank : TTGTTTTCTTTGGATTTCAAATCCTTCAGTTTATTTTATTCAATCTTTTAAAGTCCACTTAAAAGTGATTCCCCTTGATCAGTTAACCCCTTCCGCCGCAACAACCTATCTTGAATTTATCCGCTCTTATTACACAGTGTAAAAGAAATTAATAAATTAATTAATTATTAGTAATAATTTTTCCTCTTATTGCACATAATATTAATCGTAAAGCTTAACTTAACTACTAAATTAAATATAGGAGGTCTACTTATATGAAAGAAAAGTCCTATGCCTTTAAAAATGAAAGGGGGGAGCTTATAAATTACATTGTTAAAGAGTATCTTTCGGTGAATAGCAGTGACTATGTAATTATGTCACCTGAAAATAAAGCTACACAGCTGGAAGTTTATAAGTTTAATCTTGAAGATGGTAATGAGTACCTAGATGCTGTTAAAAACCAAGGGGAGCTTAATTTAATAAAAGCTTCTGCAAAGACTATTTAATTTAAGCTTTACATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2453-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDK010000019.1 Clostridium algidicarnis strain CM030 contig00019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2452 29 100.0 37 ............................. AATAACACAAGCCCCAGCAGTGGACAAAAACTTAATT 2386 29 100.0 37 ............................. CATTTTCTCTAATCCAATTTGAAGCGTGTGCTTCCAT 2320 29 100.0 36 ............................. AGAGGCAACTATACAATCTCTTGTATGCAGATGTGA 2255 29 100.0 36 ............................. ATCCCTAGTCCCGAACGAACTGTAAATACAATAGAG 2190 29 100.0 37 ............................. AAATATGGTGACCAATTATTCAGAATTAAAAATAAAA 2124 29 100.0 36 ............................. TCTCTAGTAATTAAGTATTCACATTGTGTCCTATTC 2059 29 100.0 36 ............................. AACTTAATATACAAGCACGTAGAGGATAAATACACC 1994 29 100.0 34 ............................. CAATGGTTACAAAGCATGTCAGATTGGTTTGCAC 1931 29 100.0 35 ............................. TTTGTATCTGTTGGTCTTATTAACCCTATATGGTC 1867 29 100.0 36 ............................. CAGCCTAAAATAAGGCATTATCATTATTCAGACTTT 1802 29 100.0 36 ............................. AGGGTGGACAAGTAAGAAAATGGTTAATTTTACTAT 1737 29 100.0 36 ............................. ATGTTTAAAATATATAAAAATGATAGTAAATGTAGG 1672 29 100.0 37 ............................. AGGAATTCATTAGCTGTAATATCTTTTATTATTTCAA 1606 29 100.0 35 ............................. TTTAAGATTAAAACTGATATATTATTTATTTCTTG 1542 29 100.0 37 ............................. AGCTTTTAGCACTACTATCAGCAGTAGCAACAGTACC 1476 29 100.0 37 ............................. GAAGATAAAGCACAAGAAATGATTTTGAATAATTCTT 1410 29 100.0 35 ............................. AAAGTATTTATGAACTCTATGGATTTAGGAAAAGG 1346 29 100.0 36 ............................. AACATTAAGGCAAATATTGCACCAGCAACAGGTAAT 1281 29 100.0 37 ............................. AAATCCTCTGCGACCTGTCTACTACTAACCACTAGCT 1215 29 100.0 35 ............................. CGTATTGTTTAGTTTTTGCTGGAGTATATGTCCTT 1151 29 100.0 35 ............................. ACCAACTACAAAGAAGCTTTATTATTATTAATTGC 1087 29 100.0 37 ............................. AATATTATAATGGAAACTTGCTTTTGCGACAATACAA 1021 29 100.0 36 ............................. ATATTAGCATACACTTCTAAGGTAAGGTTATTAAGA 956 29 100.0 36 ............................. ATAGATGTAATAACTTTTGCGAATAGCATAGATAAG 891 29 100.0 36 ............................. CTTGCTACTGCTATTGCTCCCCACTTTACATAGCTA 826 29 100.0 37 ............................. TGGCTCATGTGGGAGTTTTTTTTTGCTTTATTTCTTA 760 29 100.0 37 ............................. AGATAAGCTTAACTTAGGAACATCAAACAAAATAATA 694 29 100.0 35 ............................. AAAAATTCAGATTCATAAGTTTTTTGATAAACTTT 630 29 100.0 36 ............................. TAAACGGTTTATACAAGGCTTAAAACGTCACCTTGG 565 29 100.0 37 ............................. GCGTTCGTGGTTGAGCGTAGCGAAACTGTCTTCTGTA 499 29 100.0 36 ............................. TGTATAGAAATCAAGTTAATAGCTTAGAACAACTTG 434 29 100.0 37 ............................. TCTAAAAACAACAACTCCTTTGTTTTTTTTATCATCT 368 29 100.0 37 ............................. CATATAGGACACAAAATTGTGAGTAAAGAAGGTGATT 302 29 100.0 38 ............................. AAGTTAAGCTTATCTGTTCTTAATAAACTTTGGACACA 235 29 100.0 35 ............................. AGGGCAACTATACACACTGCATGATGACTTTGCAG 171 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 100.0 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : AAGTGTTTTAAATGATTAAAATTAATGATATAATGGTGGTGATATTTTGTTTGTGATTTTAACTTATGATATTGAGGAAAAGAGGATAAATAGAGTTAGAAAAACACTTAAGAAATATTTAACATGGACACAAAATTCAGTGTTTGAAGGTGAGATAACAGAGGGAAAGCTCCACAAATGTTTATCAGAGATTAATAAACTTATAGATAAAAAAGCAGACTCTATATATGTATACAGGGTAAAAATATCTAAAAACATTAGAAAAGATGTTATTGGAATAGAAAAAAGTTTTGATGAACTTTTTTTATGACTAAAACTGCATCGATGCAAACAAAGGTTCTAGGTGCGACAACACGTTGATTTTACTCTGTTAGAATAGAAGTTTCTATAAAATAACAAAACATTATTCTAGGTTCACTGCAAAATTGTCTATTTAAGCACTATCAATGGTAGCGTCTAGGCCAGTAATACCAGTATGTTAATTAATTGTGATCTTTGGG # Right flank : GATACTTTTAAAGATTGGACAAATAATATACAACCTAGATTCTACGTCAGTACTTCAAAAAGCATAATCAAAGCCTTGATAAATATGCGTTCCTTCGAAATTCAGCTTTCACCCATTGGGTGAAAGAAAAGTGCTCAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //