Array 1 226850-224731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZZ010000002.1 Listeria booriae strain FSL L7-0029 NODE_2_length_549291_cov_37.751229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 226849 30 100.0 36 .............................. ATGGGCATTAACTTTATTCCAATCGTACTATTCCCC 226783 30 100.0 34 .............................. TTAAGTACATATGCCATGGCACCTGATGGACGTA 226719 30 100.0 35 .............................. AAAAGTCCTAAGAATCGACATAGAGACCTACTCTA 226654 30 100.0 36 .............................. TAAAATGGCTGTTATCATTCCAACGACTAAGGAAAA 226588 30 100.0 36 .............................. TGCGCTTGTCATCTTCGACAAGTCTTTCTATTTGCT 226522 30 100.0 36 .............................. TTGCTCGTGTCAATGTCATGATCCTTCACTCCGTTC 226456 30 100.0 37 .............................. TTGGAGTTGTACATCATGCCATTTCCTGTATAAATGC 226389 30 100.0 35 .............................. ATTTGTCAAACCAGTTCCTAATGAAAGATTTTTAG 226324 30 100.0 36 .............................. TCGATTAATACAGCCGGAACTTCGTTTGTCTTAGCC 226258 30 100.0 36 .............................. TTCGTCAGGAAATGCGAGATACCCGAAAGAGCCTTT 226192 30 100.0 34 .............................. GTATTTTATGGTGCCATCGGCTTGCTGTACTTGG 226128 30 100.0 37 .............................. CGAATCCAGGACGGTTCGAAGTCCACAACTGAAGCAA 226061 30 100.0 36 .............................. TGAACATCACTTTATCTTTTGATACGTCCTTACCGC 225995 30 100.0 35 .............................. CCTACTTGCTATTGCGGGTAGGTGGTTTTATTTGG 225930 30 100.0 35 .............................. TACTAAGCTTGTGTGACATTGTTAAGCTTTGAATA 225865 30 100.0 36 .............................. TCGATTGTTATTTCGTTAGAAAAAACAGCACGCGGC 225799 30 100.0 36 .............................. ATGCCTGATTTATTCATACGCAATACTTGCTTCGCC 225733 30 100.0 34 .............................. CCTTGATTTCGATACCCTCTGTTATCGCATCTAA 225669 30 100.0 35 .............................. GTCCCTGTGAATGGCATGTTTATAGCATTGCTAGA 225604 30 100.0 36 .............................. ACGAGCAAGCAAACAGGCGTATTTCTAAGGCATTTG 225538 30 100.0 36 .............................. TAAGCAGTATCGCACTCAATGGCACAAACATAAGTC 225472 30 96.7 36 ................A............. CCTTTAATTTTTTAGTTTTTTTCTTAACTCTTACTA 225406 30 100.0 36 .............................. GCGGCTGGAACATTAAAGGCGCACGTGAATGATATC 225340 30 100.0 35 .............................. TAACCTGAACCCACCTATACCAGCACATAAATCAA 225275 30 100.0 34 .............................. AAGGTTTCGCTGAACATATCTTCGTTGATGTACA 225211 30 100.0 36 .............................. AAGTAAAGCACAATCTGCTTTCAGCGGTACAACACG 225145 30 100.0 36 .............................. GTCGGTGTTAAAGTGAAAGCAAGACTATCACTTTCC 225079 30 100.0 36 .............................. ACGCGTGTTGACTGCGATACATACGAGTTCATTCGG 225013 30 100.0 36 .............................. TCAAGCGGAAATGTTGAAGTCGTTGCGATAGGTAGT 224947 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATTAGGGAATA 224881 28 90.0 35 ..............T...--.......... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC 224818 30 83.3 28 .........C...C...A..G...A..... TAGGAAAAGGGCGCACTTATACACCCTG Deletion [224761] 224760 30 70.0 0 C.....TC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 98.2 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGCCCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGACTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATAGTTGCGCGAAATTGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 213080-213501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZZ010000004.1 Listeria booriae strain FSL L7-0029 NODE_4_length_323342_cov_39.099804, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 213080 30 100.0 36 .............................. CGCTAAGACGGCGTACTTGTCGAACGCATTTCTATG 213146 30 100.0 35 .............................. AGATTCACCAATAACTCACCGTTTTGTTTAGTATC 213211 30 100.0 35 .............................. AGATTCACCAATAACTCACCGTTTTGTTTAGTATC 213276 30 100.0 35 .............................. AATGAAAAATGAAGATGGAAAACTAACAGCTCACC 213341 30 100.0 36 .............................. TTTTCAAATGTTGCTTGAGTGCCTAGCTTCGGATTA 213407 30 93.3 35 ........T........A............ CAAACAGATACGGCATGGGCGGAGTTTGAAAGATG T [213423] 213473 29 83.3 0 .................A..-...C..G.C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTATTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGGTTTAGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTAATCGGGTACCT # Right flank : CTAGATTGCCCATGGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAATAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACCGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCAGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGTCTCAGGTCGATGTGCTTATTACGATGGTTGGATATCCGACTGATGTGGAGAAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAGGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 109541-109769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZZ010000008.1 Listeria booriae strain FSL L7-0029 NODE_8_length_158305_cov_36.451030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 109541 30 100.0 36 .............................. TCTTTGAGGATGTAGTAGATTTAGACATTATACAGA 109607 30 100.0 37 .............................. ATCAGTCGTGTGCAAGTATGGACGATTCTATCGCACG 109674 30 93.3 36 ....................A.....C... GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 109740 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 94.2 37 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATTGTTCTAATTGCTGTCGGATTCGCCGGCACAACCAAGTCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGATCTCCAGTAGCGTAAAAATTAGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAGCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGAGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAAATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCAAAAAAAGCAATTGCTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAGCAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAAGAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 113017-113640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZZ010000008.1 Listeria booriae strain FSL L7-0029 NODE_8_length_158305_cov_36.451030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 113017 30 100.0 37 .............................. ATAGTATTGATGCCGCGATTTATATGTACGGTTTCAC 113084 30 100.0 37 .............................. ATCGATGCCCCAATAGGTACTATAACGACGGTTGATC 113151 30 100.0 36 .............................. TACTTCGTAAACGGCTGCTAAAAGTACGTGAATCTT 113217 30 100.0 36 .............................. ACGACTGGAGCAAATGGTAAAGTAACAGTTTCTGAT 113283 30 100.0 36 .............................. ATGGCATATTGAACATTTTTAATCCGTTGATCCATT 113349 30 96.7 36 .............T................ CTATTTTTCGTGGCTTTATTTGAAAAAGATGGGCAA 113415 30 93.3 35 .............T...A............ CATACCTATCGTTTTGATTATGCACAACAGGTGCA 113480 30 93.3 38 ...........G.T................ ATCGTGGTTGGATGCGCAATTGCGTTTTTTAAGCCCAG 113548 30 86.7 34 T........A...T...A............ TTACCTGCACAGCACGCAAGATTGGTAACTTACG 113612 29 73.3 0 .G...........T..-.A.G...C...CA | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 94.3 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTCGAGTACGAGAAGAAAACCATTCCTGTGAATAGCGCGATGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAAGGGGTTAAGCCTGTTTTCGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AAATAAGGCATTAGTAAAACGAATTGAATAATAAGAGGGTTAATATCCATTGTTTAGTAGTAATGGATATTAACCCTCTTATCTATTGGCCTCTATGATGGAATTTTTTTAGTATGCAGTTAACAACGATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATAGTGTCCGTATTTTTTAAAATCACTCGTTTCGCATAAT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //