Array 1 57420-56780 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B5146 NODE_1_length_496740_cov_80.825596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57419 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 57358 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57297 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57236 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57175 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57114 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57053 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 56992 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 56931 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 56870 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 56809 29 96.6 0 A............................ | A [56782] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75166-73552 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B5146 NODE_1_length_496740_cov_80.825596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75165 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 75104 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 75043 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 74982 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 74921 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 74860 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 74799 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 74738 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 74677 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 74616 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 74555 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 74494 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 74433 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 74372 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 74311 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 74250 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 74189 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 74128 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74067 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74006 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 73945 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 73884 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 73823 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 73762 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 73701 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 73640 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 73579 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //