Array 1 105623-106234 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZNZ01000010.1 Bifidobacterium vespertilionis strain RST16 NODE_10_length_117684_cov_98.467603, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 105623 36 100.0 28 .................................... AGGTCGTGCCCAACACCACCGGCTACCC 105687 36 100.0 28 .................................... ATATCCTGCGCGGACCTACCGGAGAACT 105751 36 100.0 28 .................................... CCGGAACGCTCATCTACCCCGCGCGCAA 105815 36 100.0 28 .................................... TCAGCCGGTAAGGCAAGGCGAGAAGCTT 105879 36 100.0 28 .................................... ACGCGACCTTCCAGAAGAAGGATTCGAA 105943 36 100.0 28 .................................... TGGCAGCCACGTCGCCAGCGTCGCCCAA 106007 36 100.0 28 .................................... CCACCCTCCCCGCGCCGCTCGACTGACA 106071 36 100.0 28 .................................... ACACCGCGCACATCGAACTCGCCGAATA 106135 36 100.0 28 .................................... GTCCAAGAGCAAAATCGCCAGCAACCGT 106199 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 GTTGGGAATTAGCATCCTCCCCTCTTGATAAGCTGT # Left flank : CCCCACCGATGACCGGACGAGCGCCATGTCCGGCATGGCGTACCTGACAGAAGCGGCCGCGAAGCCCGATCCCACCCGGGCGAAACGACCCGTCGGCCGGGAACACGCGTACACGGCGGACTTCACACCGCTCGACGGACGCCATACCCTGATCACGCTGAGCGCGCCGCTGAATCTGTTCCCCAAGCGCGGCAGGACCATCGATCTGCTCGTCTGGCCCCACCGCCACGCGCGGGATCTGCAGCAGCTCGTCGTGCGCACGGACTACACGCCGATCATCGTCGCATTGCTGGAAAACACGGGGTTCACAACGGCCGTACACTGATCCCAAACCGGCGACGAATGCCGAGGAAACACCCAATCGGGAAAGGAAGAGCCGACTCTGAGTACCAAACAGTCCCGTCACTTCAGCACGACCACGCAATTTGGGGACATGATCGTCGTCTGCTCGCCCAGCGAACACCTTTCTGCCATCTCGGCCACATCAACGGCGACCAGTA # Right flank : TAGAGCCGCTCAAGAGGGGCCATATTTCGCCGTTTCCACAGGTTTTCACGTTCAGAAAAGCGTAAAGATCTCTGGCGTCTCACTTTCGGATTCCTGTCTGAGATTGGAAAACCGCAATGACGACGACCACTGATGGTCGCTGATGTGCAGAATACGAACGGATCCCTGAGCCGGAAGATTGTCCTTGATGGCCTTCACCGTTGCACGGTTACCAGCCTGAGTGGGTGTATACCGCACATATACGGAGTACTGAACCATGCCGTAGCCCATGTCGAGCAGCAAATTCCTGAACTCTACAGCGCTATGGCGTTGCCGCTTCGTCTGCACCGGAAGGTCAAACATCACCAAGCACCACATACCGCCACTGTCCTCGTCGGTTTTCATGGCGTACCCAGATATTCCGGAACCGTCAGTCTGTCTATTTTGCTTTCGCAATATAGCCCATACTGCTGGGCAAAATCGTTTAATGAGCTCGGTATTGTCAACCCATCACCATTGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATTAGCATCCTCCCCTCTTGATAAGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 24139-25145 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZNZ01000021.1 Bifidobacterium vespertilionis strain RST16 NODE_21_length_43314_cov_125.843796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24139 29 100.0 32 ............................. GGCATCGGCATCGGCGACGCCATCCAAGTCGT 24200 29 100.0 32 ............................. GTCTCCGACGCCAAGACCGCGCTTCAGGACCA 24261 29 100.0 32 ............................. TCGGTGAGGTTCATCAGGGTGCGGCTGATGCG 24322 29 100.0 32 ............................. CCGTCGGTGCCCTGGGTGAGGAGTTCCGCGGC 24383 29 100.0 32 ............................. TTGTTCGAGCCATTCGCATGCCTCGTAGAGGG 24444 29 100.0 32 ............................. GCGGGGCAGCCTTTGGATTGGAGCGCGACCTC 24505 29 100.0 32 ............................. ACCAAGTGAGCGAAGGGAGACCGGCAATGCCA 24566 29 100.0 33 ............................. GCCCACAACCAGATCGCCTACCGCACCGAGGCG 24628 29 100.0 32 ............................. GTCAGCGGGTCCAAGCCGGCGGCGATGCACGC 24689 29 100.0 32 ............................. CCTTGGCGCGTCTGATCTTGTCCGGGCTCCAG 24750 29 96.6 32 ............................T CCTCCGACGCATAGCGCCGCCAGAGCGTCACG 24811 29 100.0 32 ............................. GCCAACGCATGATCTGGCACCATCCGGACCTG 24872 29 100.0 33 ............................. GGCACGGCGTAGGGCTCGGGCAGGACTGTGGAG 24934 29 100.0 32 ............................. AGCTGGATCTTCCGCATGAAGGACGGCAACGC 24995 29 100.0 32 ............................. GCGACGGTCACGGTCCTGACGGACATCGCGGC 25056 29 100.0 32 ............................. GGGGACGCGAAACGATGCAACCTCCAGCTGCC 25117 29 89.7 0 ................T...A.......A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTTGGCCCCGCATACGCGGGGATGATCCG # Left flank : ATGATGAGCCTGAGCGACCGCGTGGCCGACCCGGAGGATTCCTTGGACCATGTGACCGTGGTGGACGACCAGTACGGGCGGCTCACGTTCACGAAGGACATGGCCGGGGCGGTCTTCCACCTGTTGGATTCGCACGCGCCCTATGGCACGTACAACCTGACCGGGAGCGGCGCGGTGAGGAACTGGGCCGAGATCGCCGCGGCCGTATTCGAGCAGACGAACGGCAACGGCGACAGGGTCCAGCCGATCTCGACGGCCGAGTACTTCGCCAATGCGAAGAACCCGGTCGCGCCCCGCCCGACGCATTCCGCGCTGGACCTGAGCAAGATCGAGGCCGCCGGGTACACGCCCGCCGACTGGGAGGAAAGCCTCAAGGAATACATAGAGCGAGAACTCAATTGATAGATGCGATGCAGATCATGCGGATTGCGCTATGGCACGGTGCACGAATCGAATATTCTCACTTGCGCCACGACCAATTTCCCGCATAAAGTATGACT # Right flank : AAGTAAGCGCCTCGGCTACTACCCAAATGGCGGTAGCGGGGGCGCTTACGTCCCAATCATACAGAGAGGCCGAGTGGAGCCGCCTGTAAAGCGGCCGTGCAATCCATGCAGGTTCGAATCCTGTACTACGGCAAACCACGGGATGAGTACCCGCCCATGCAGGGATGATTGATAATCTGGACATCAACCGGGATATCGCACCCGGACTTACGGAGGGGACAGACCAGTGAAAACGTTCAGGGAATTGAAGAGCGCCGCGCAGGCCGAGGCCGCGCGCCACGGTGACCGCATCATCGATCCGCTCGGCGTAGTGGACGGGAAGATGGTGTTCTACGCACTGCCGCCCGGCATACACGAGGGCGACATCGTCGGACTGCCGGAAGCCTACTGGGTGGACGTGCGCACGGGATCCGCCCGCCCGTTCACCAACAAGGAATGCCGTCTGCTGGTAAACAAGCAATTCCTCGAATCGGCCGAGCCCATGCAGGAGTAGGCCGCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCATACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2420-1662 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZNZ01000007.1 Bifidobacterium vespertilionis strain RST16 NODE_7_length_160155_cov_133.834429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2419 36 100.0 35 .................................... TCCCTGCCGAAACCATCCAACGGGTTGTTCGACTC 2348 36 94.4 36 .......C..C......................... TCGCACCTGTACACGAAACCCTCGAAGTTGCTGTTC 2276 36 100.0 35 .................................... CCGGACATCCCGCTCAACCTCAACGTCGGCAACCT 2205 36 94.4 36 ..........C........A................ CATGATCCGGACAAGCAGCATTACATCGACGGCGAC 2133 36 94.4 37 ..........C...T..................... CCCCCGGCCTCTCCCCACCCAACGCCGCTGCGTCCTC 2060 36 97.2 36 ...................A................ TCGTCAAATCTCACCATCAAACCTCCAGTAATCCCC 1988 36 94.4 35 .......C.........C.................. GTGCAGAAGAGCGCGATCGGCCAGATCCCCGCGGA 1917 36 97.2 36 ...................A................ CATGTTGTCTTCTCCTTTCAGGATTGCATTTGTCTC 1845 36 100.0 35 .................................... CAATCCCTCGTCATGGATTCCGGCAGCACGAGCTC 1774 36 91.7 41 ..........C...T....A................ GAGCCTGCGAGACTCATCATCATCATCATCGACGAGACCAT 1697 36 91.7 0 ..........C.......................AA | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 95.9 36 GTCTCCTTGGTTAACGCTGGGGAGCTTCATTGAGGG # Left flank : GAATGCGTTTGCAATACAGCGTGTTCCTGTTGGAAGTGCGCAAGTCGGCTTTGCTGAAGGTCAAAGCGGCGCTTGAAGATGAGATTGATAGTTCTCAGGATTCGGTGCTGATCTGCGACTTGGATACGTGCGAAGGATCTGAGAGCGCCATGACGTTCATGGGAAGACGCGGATATCGTGATGTGACAGTGCCACAGATTATATGAGCGCGAACGTACGTTTATCCTGTCTTGTGCCTTTCCACGTATTCGCTGACTGGCAAGAAAGCTAATTCACCAAGACGTGATGGCAGCTTGATAATTGAAGAGTGCTTTGGTTGGAGTGCGATCCGCAATGCGAGAGCTATATCGAGATATTATTGCCTGTGAGCGCTCGCTGGCGGAATTCCAAGGTTTTTGGCTGCAAAGCATTGCAGCCGGAGCTTGTTATGTTCGCTGCTTGCTGTAGCGCTCGCATGGAAGGTATTTTGTTCCCCTGTGCTATGGTGTGAAGGTATGGCG # Right flank : CGGGAGGGACGGGCGAATAAAAAATCGGGGCTGCCTGCACGGGGCGCTACTGGCCGAGCAGCACACCGTAGCGCGCGACGAGCCCTTGGTCCACTCGCTCGAATTCGGGGATGTACTCGTCGATGACCGTGCGCACGAGCTGCTTGGCGCGGGACTCGTCATAGATGTGCGCCGAATCGTTGCGATCGCGCAGCATGCGCAGCCAGAGCGATTCGTTCATGAAGTCGTAGTACTGGTATGCCGTTTTGAGGACATCGCGCGGCGATCCCGATGCGGAGACCGGATCGCCCTCATATGCCAGCAATGCCTTGAACAGCTTCCACCCGAGTTCGAACTGGAGCTCGAACTTGTCGATGATGCCGCTCTGGATGAACTCGTTGCTCAGATCCTGTGAAGGGGCCTGCCGCAGTGAGCGCAGTGCGGAAGCGTAGTTCTCATACTTTTTCATAGAGCACCTTCCCGGTATGGGCTATCTCCGTTCTCAGGGATTCTGAGATGGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTGGTTAACGCTGGGGAGCTTCATTGAGGG # Alternate repeat : GTCTCCTTGGTTAACGCTGAGGAGCTTCATTGAGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //