Array 1 197-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFC01000138.1 Staphylococcus warneri strain SNUC 1052 contig138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 196 25 100.0 47 ......................... TCAGCGTCAGTAAGCGCAAGCGACTCAGCGTCAACAAGCGCAAGCGA 124 25 100.0 47 ......................... TACATCAGTAAGTGCAAGTGACTCAGCATCAGTAAGTGCATCTGATT 50 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================================== ================== 3 25 100.0 48 CTCAGCGTCAACAAGTGCATCTGAC # Left flank : AAGCGCAAGCG # Right flank : CAGCGTCAACAAGTGCAAGTGACTCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCGTCAACAAGTGCATCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 2792-2099 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZFC01000075.1 Staphylococcus warneri strain SNUC 1052 contig075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2791 33 100.0 33 ................................. AACAAAAGGAGTGAGAAATTATGAAAGAAAGAT 2725 33 100.0 33 ................................. AACACCTGTAACTGTGTCTCTACCAATAGGAAT 2659 33 100.0 33 ................................. AACCGTTAAGAATTAATAATAGCAACCAATTGG 2593 33 100.0 33 ................................. AACAGACCCGTGTATGGTATCTCTATGGACGTC 2527 33 100.0 33 ................................. AACAAACTGAGTGGCATGGACGACGAAGGTACC 2461 33 100.0 33 ................................. AACGAATACTATCAAAACGTTCTTAGTGACTTT 2395 33 100.0 33 ................................. AACTATAAATTATGTGATCGAATGGATAAGAGA 2329 33 100.0 32 ................................. AACATATCAAATGCTTAACTTAGGTAAATATC 2264 33 100.0 33 ................................. AACTCCTGCATACGAAAATACTTCAATCAGTGC 2198 33 100.0 33 ................................. AACGCTTTTTGAAAAATACAACTGAAGCTTTTA 2132 33 97.0 0 ................................G | A [2101] ========== ====== ====== ====== ================================= ================================= ================== 11 33 99.7 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTAGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATTATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCAATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATTGAGAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //