Array 1 12221-14037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPYN01000009.1 Streptococcus agalactiae strain BG-NI-010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12221 36 100.0 30 .................................... ACGTCTTCAGGTGTTATTCTTGGGTCTTCT 12287 36 100.0 30 .................................... AATTTAAAATCTTCATCTTCTATACGTTTG 12353 36 100.0 30 .................................... TAAAGCTAACGTTAGTCGTTCGCTCGTGGT 12419 36 100.0 29 .................................... AAAAGCAATGGAAGCTAACGAGATTGCTA 12484 36 100.0 30 .................................... GCCTGCCCCACAAAAAAGTATATTATTATT 12550 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 12616 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 12682 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 12748 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 12814 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 12880 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 12946 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 13012 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 13078 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 13144 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 13210 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 13276 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 13342 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 13408 36 100.0 30 .................................... AAAAAGCAATGGAAGCTAACGAGATTGCTA 13474 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 13540 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 13606 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 13672 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 13738 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 13804 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 13870 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 13936 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 14002 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGCTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //