Array 1 433046-432118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRM01000006.1 Pseudomonas aeruginosa strain AZPAE14929 AZPAE14929_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 433045 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 432985 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 432925 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 432865 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 432805 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 432745 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 432685 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 432625 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 432565 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 432505 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 432445 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 432385 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 432325 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 432265 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 432205 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 432145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 269919-271323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRM01000018.1 Pseudomonas aeruginosa strain AZPAE14929 AZPAE14929_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 269919 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 269979 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 270039 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 270099 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 270159 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 270219 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 270279 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 270339 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 270399 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 270460 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 270520 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 270580 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 270640 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 270700 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 270760 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 270820 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 270876 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 270936 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 270996 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 271056 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 271116 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 271176 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 271236 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 271296 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280898-279849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRM01000018.1 Pseudomonas aeruginosa strain AZPAE14929 AZPAE14929_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 280897 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 280837 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 280777 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 280717 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 280657 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 280597 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 280537 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 280477 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 280417 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 280356 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 280296 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 280236 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 280176 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 280116 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 280056 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 279996 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 279936 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 279876 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCAGCTAAGAAATGGCTGATCAGGCTCCAGAACGGATCGTAGACGTTCACTGCCGTGTAGGCAGCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 281414-281086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRM01000018.1 Pseudomonas aeruginosa strain AZPAE14929 AZPAE14929_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 281413 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 281353 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 281293 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 281233 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 281173 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 281113 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGCCGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAAGCTGGAGCGACGGCTGGCGGCAATTCGTGTTCACTGCCGTGTAGGCAGCTAAGAAACCGGACGTTCACGCTGGTGGTGAGACCATCCGGTTCACTGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //