Array 1 52758-57411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHAL010000007.1 Psychrobacter nivimaris isolate Psychrobacter nivimaris 88-2-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================= ================== 52758 28 100.0 32 ............................ TTTGGCATACCGTTGAACCAGCACTGATACCA 52818 28 100.0 32 ............................ AGTTTTTCAAGCGCATTGGTAAATCCGCTAAT 52878 28 100.0 32 ............................ TGCTACGAAGCCTTTTTCTTCGCCTTCTCCAT 52938 28 100.0 32 ............................ CGTTAGTGTATTGAGTGCTTAAAACATCATTG 52998 28 100.0 32 ............................ TATCACCCCTGCTGCTGTCACTCTTGCTATAA 53058 28 100.0 32 ............................ ATTACCGCCAAACGCTTGCTTTAACAGCAGTT 53118 28 100.0 32 ............................ TCGGTAAATGGTCAAACATTGCAAGCGCCTGA 53178 28 100.0 32 ............................ TAAAGGCTTCAAGACTGGCGGTTACACTGGCA 53238 28 100.0 32 ............................ ATAAAAAAGCCCTCATTAGCGAGGGCATAGGT 53298 28 100.0 32 ............................ TCAACAAAGTAGCCTGTCTCATCTAAACCAAG 53358 28 100.0 32 ............................ GATACATCGTACCTGCAATCACTTCTTTGGCG 53418 28 100.0 32 ............................ TCTACAATCCGCTTGCCTGTCTTGGTGTCCGT 53478 28 100.0 32 ............................ TAGCAACGGCGCGACATTTACGGGCGCGTTTG 53538 28 100.0 32 ............................ GTGAGCTTGGCGCTGTGGTTATTCAGATATTC 53598 28 100.0 32 ............................ TGTGTATTTATCTAGCGTGTCTTTTGTGACCT 53658 28 100.0 32 ............................ ATTAAAATGCCGTTTAAGTTTGCCGACAAAGT 53718 28 100.0 32 ............................ TTATAAAAAGACTCGTCACCACTAAAGCACTC 53778 28 100.0 32 ............................ TCAAATGACTGCTCATTGCTAAGTGCCAGACC 53838 28 100.0 32 ............................ TAGTGCCTCTCTCGCCTTTTGATTGCAAAACG 53898 28 100.0 33 ............................ GTAAGGGGGTGCAGTGCATTGGCACCACTGGTT 53959 28 100.0 32 ............................ AGTGTGTAGCAGTCCATGAGTCCGTGATGATA 54019 28 100.0 32 ............................ AATATTAAATCAGCTACCGACAACACAGGTTC 54079 28 100.0 32 ............................ TGTCATAAACTCTTCTTGGTCAAGCATCAAAT 54139 28 100.0 32 ............................ TTGTCAAGAACGTCATTAGCAAAAGCAACGTC 54199 28 100.0 32 ............................ TACTGGAAACCTAAAGCTAACAGGTACGGTTC 54259 28 100.0 32 ............................ AACCCCTCGACGTCACTAGCTCTTACCTTGCT 54319 28 100.0 32 ............................ ATAGCCTTAGCTTGCATAGCCATAGGATCGCC 54379 28 100.0 32 ............................ CTAGTCCGGGTGCTAGTAATGCCGCACTACTT 54439 28 100.0 32 ............................ TGATTATCGTTATACAGACAACACAGGCGGCA 54499 28 100.0 32 ............................ TGCCGCTAGTATCTCGTTAGGCACATCGTCGG 54559 28 100.0 32 ............................ TTAAAGCCCTTGATGCTAAGTAACTAATTAAA 54619 28 100.0 32 ............................ AACCCCTCGACGTCACTAGCTCTTACCTTGCT 54679 28 100.0 32 ............................ TAGACTCGCGCACCGTCGATATGACGATTGAG 54739 28 100.0 32 ............................ TGAGTCTATGACTAGCGAATACTTACCGCCAA 54799 28 100.0 32 ............................ TTGCCTTTTGGCTCTGCATACGTTGGCTTGTA 54859 28 100.0 32 ............................ GTAGAAGGTGAGAGTCATAATGTTGGTGAAAT 54919 28 100.0 32 ............................ ACTAAACGTACGTTTAGTCTTATCGCCTGTCT 54979 28 100.0 32 ............................ ACTGTCTAATTGGTCATTAACCAAGCCCATCA 55039 28 100.0 32 ............................ GATAACCGATTCAGCATCTAGTTGCGGATAGG 55099 28 100.0 32 ............................ GCAGTATCGTCTTATATGACTTTGCCGGAAGC 55159 28 100.0 32 ............................ AAACGAAGATGGTGAGCTGATGATTCAGCTTA 55219 28 100.0 32 ............................ TATCCTTTTTAAGTATGCCAACCGCTTAGCGG 55279 28 100.0 32 ............................ AATAAGTTTTTATCTTCAAGTGTAGAAAAGCT 55339 28 100.0 32 ............................ TTTAAGTCAGTTTCTTCATTAATCTCATTTAC 55399 28 100.0 31 ............................ TCAATACTATTATCACCTGTCTTTTCTTCTT 55458 28 100.0 32 ............................ TTGTCTAGTGCTGGCGCTGCTACTGTCACAGC 55518 28 100.0 32 ............................ ACCGCCGCGATAATCCCAACCGTCATTAGTAT 55578 28 100.0 32 ............................ TATTGCTTAGGCTATCTAATACTACCTATCAT 55638 28 100.0 32 ............................ TGTTCCTAAAACTGGCATTGAAAAAAATGAAG 55698 28 100.0 32 ............................ GTGGGACGACGACCATCAAGAATACACGGGGC 55758 28 100.0 32 ............................ AGAATCACGCAATTGCCTAATCATCTTGAATA 55818 28 100.0 32 ............................ ACTCAACGCCACAAGATGATGGCTCATGGTTA 55878 28 100.0 32 ............................ ATCAACAAAAAACCCCGTTGTTTTTGAGGGTG 55938 28 100.0 32 ............................ AGCCAGTGCCCACATAAAAGCTAATTCCTGAT 55998 28 100.0 32 ............................ TTGCACAAGCACAGAATATCGGCCTTTTGTTA 56058 28 100.0 32 ............................ CATGAAAATGACCACTTCTAATATGTGGGCGA 56118 28 100.0 32 ............................ AACTGGAATAGGTGCGAAAGTATCTAGGTCAT 56178 28 100.0 33 ............................ GCAGGCGGTGATTGGCGATAAATCAAAAAACAT 56239 28 100.0 32 ............................ TATCTAAAATACTTGTAGGCAGCACTAGGACG 56299 28 100.0 32 ............................ CTAGTTTGTCGCGCTCGGCTTTAAGGCTATTT 56359 28 100.0 32 ............................ AAAAGAGTGCTGGCTAGGACAACCAGCAATGA 56419 28 100.0 32 ............................ CAAGCCCGAGAAAATGACGCTTGCTAAATATA 56479 28 100.0 32 ............................ CTGTAAGCCATTAATATTATTTGCTAGTGCAA 56539 28 100.0 32 ............................ ACTTGTAGTGTTTCAGCGCCAACACTCTCTTG 56599 28 100.0 32 ............................ ACAGACGATGCGGCTAAGGACGTTTGCGGTGG 56659 28 100.0 32 ............................ CTGCACTCAACGACATACTACTAGCCATGACA 56719 28 100.0 32 ............................ ATTTCGTGAAAGTTGTCAGAGATAAAGCCGAC 56779 28 100.0 32 ............................ AGTAGCGCCCTTGGATTGCATAATTATATGTG 56839 28 100.0 32 ............................ TTTTCAGCTGAATACTTGTGATGCTTGACTTA 56899 28 100.0 32 ............................ GAGATCAGCGGTGCGGCTTTATCAATAGTCAT 56959 28 100.0 32 ............................ AATCACGCAGGGGCGGTGTTCCGTCGTGCTAC 57019 28 100.0 32 ............................ TGATGATGTTCACCTTGAGCTTTTTGAATTGC 57079 28 100.0 32 ............................ ATAACCACATGCTTCTCACGGTCTGTTGCGTG 57139 28 100.0 32 ............................ TCACCAACTAGCTGATACCAGTTACCTAAACG 57199 28 100.0 32 ............................ ACCCTGACGGCTCTACAAACCCAAGTATGCCA 57259 28 92.9 97 ..........................GC AGCGTTAAAAAATTGTACTGCAATTTTAGTTGTGCAAGGAAAATCCTTTAAATAGAATTTTCAGAAGTTATAATTCCAAACGCAATTCGGAAAAATG T [57283] 57385 27 89.3 0 GA..-....................... | ========== ====== ====== ====== ============================ ================================================================================================= ================== 77 28 99.8 33 CTTCATCACCGCTCAGGTGACTTAGAAA # Left flank : ATCAAAGGCATCAAAGACGTGCCTATAGATAAAATAACGGGCTACGTGAGTGTACACCGCTATCGTTTTAAACCGATAGAGGTACAAGTAGAATCTCTAGCCAAAAAAATGGAGATTAGCAATGACGAGGCAATGGCGATAGTTGTTAAACGCAAAGCTGAATTAAAGCTGCCTTTTATCAGAATGTTTAGTGAAAGCAATAAAGCCCATTATCCATTGCAAATTTTACAACAACCTAGTAAACAGGACGTAACTGGTGGTTTTAATGTATACGGTATGAATGGCATGCGCGATAACGTTACTGTGCCGCAGTGGTAGTAGATAAAGTTAAAGGGTAATGATGAATTATCCTTTAATTGGGTATAAAAACCTTTTTTTTAATCTATTTAAAAACTTGCAATAAAATCAAACAGTTATGACAATATGAAAATTGGAGGGTAAATTAGGGTATTTTGCCCTCCGCGCCTTGTTATAACTGTCTTTTTTGAGGTATAGTTCCT # Right flank : AGCTATAGGTGCTGAGTGAGAGACTGCCATTTACGGGTTTCATCACCTATAGGATGCTTAAAAATAGCGGGGTTTAAAGTAGTTGACAGATGTCATTGCCTAGAAATTCGATTATAGTAGATATCTATAACTATTATTTAAACAAGCTAAGGGGTTGAACCATGAAAGTACTAGGATTGTGTATTGCAGCAGGACTGGGCTTAAGCGCTTGTGCTATGACAGGTAATACAGACCAAAATAATAATGCCAATAGAGTCGTCACTCAATATCCTGTTGAAGCTGCCATACTAAACATCTACACCAAGCAACGCAGTGATAAGTTAATTGCCACGGTTGGGAATCAAAGTGTATCAGCAGAAATTCAAGTCACACCTAAAGGCAGTATGCGATTCAATAATAAAGCTGTACAAGGTGCCGAAGTAAACACTATCAATAAAGTGAATGATCGAATCACTGATCAGTCAGTCGCTATCAATTACTTTACCCTGAACCCACTCGTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCATCACCGCTCAGGTGACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCATCACCGCTCAGGTGACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //