Array 1 40195-39432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPG01000008.1 Escherichia coli strain MOD1-EC5905 MOD1-EC5905_8_length_211495_cov_22.4879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 40194 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 40133 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 40072 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 40011 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 39950 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 39889 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 39828 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 39767 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 39706 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 39643 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39582 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 39521 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39460 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67082-65894 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPG01000008.1 Escherichia coli strain MOD1-EC5905 MOD1-EC5905_8_length_211495_cov_22.4879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67081 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 67020 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 66959 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 66898 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 66837 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66776 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 66715 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 66654 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 66593 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 66532 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66471 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 66410 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66349 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66288 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66227 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66166 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66105 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66044 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65983 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65922 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //