Array 1 163485-161821 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNO01000084.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24391 SEEH4391_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163484 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163423 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163362 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163301 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163234 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163173 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163112 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163051 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 162990 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162929 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162868 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162807 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162746 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162685 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162624 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162563 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162502 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162441 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162380 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162277 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162216 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162155 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162094 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162033 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161972 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161911 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161850 29 96.6 0 A............................ | A [161823] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180868-179742 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNO01000084.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24391 SEEH4391_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180867 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180806 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180745 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180684 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180623 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180562 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180501 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180440 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180379 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180318 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180257 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180196 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180135 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180074 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180013 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179952 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179891 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179769 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTAACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //