Array 1 128241-126870 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDIK01000008.1 Escherichia coli strain SCcd61 NODE_8_length_225020_cov_111.372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128240 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128179 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128118 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128057 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 127996 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 127935 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127874 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127813 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127752 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127691 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127630 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127569 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127508 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127447 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127386 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127325 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127264 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127203 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 127142 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 127081 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 127020 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126959 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126898 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155006-153940 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDIK01000008.1 Escherichia coli strain SCcd61 NODE_8_length_225020_cov_111.372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155005 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 154944 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 154883 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 154822 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 154761 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 154700 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 154639 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154578 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154517 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154456 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154395 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154334 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154273 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154212 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154151 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154090 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154029 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 153968 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //