Array 1 63667-70485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000046.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 63667 30 100.0 36 .............................. CCCTGACCCTAATCCTCCAAGTGATATACCTTTGGT 63733 30 100.0 37 .............................. TTATAATTATATTTGCTTTTTTTATTGGTCGTATATA 63800 30 100.0 36 .............................. CTTTAGTTATATAGTCTAAAAACAATACAGCTCCAT 63866 30 100.0 36 .............................. TTTATTATTTGAACTACAACAAGAAAATCCTAACTT 63932 30 100.0 36 .............................. CCGCCCGGATTAGAACCACCCGACTCTAATACAATT 63998 30 100.0 36 .............................. TCTTCACAGGTGTTTTTTCCTGTTCCTGCTCCGGAT 64064 30 100.0 36 .............................. TATGACAAATGTTACTTTATCAATAGATATAGCTAA 64130 30 100.0 36 .............................. ATACTTCCAGTCAAACGACCTTATGGAACAAACTGT 64196 30 100.0 36 .............................. TTTGCGATATTCATATGTTAGTATCTTTTTAGGAGG 64262 30 100.0 37 .............................. TTAATAGAATAGCTTGTAATGCCTGTCGCCATTCTTG 64329 30 100.0 35 .............................. GGATATATTTTATTATTTAGATATACTTGCATACA 64394 30 100.0 35 .............................. AAAACTTACATATATAAATTTAAAGTGTAGGGTTG 64459 30 100.0 36 .............................. AGAGAAGAGATAAGGCAAAAGATAAATAATAAGCTT 64525 30 100.0 36 .............................. ACTCGTGAAATGCGAGTTCTTAACGAAAGTAGATGC 64591 30 100.0 36 .............................. ATAGATTTTTTGAAGCTAACAATTTCAAAATAATTA 64657 30 100.0 36 .............................. TTCTTCTCATAGTTAGCATTTTCTCTATCTCTTTAT 64723 30 100.0 37 .............................. TTTTTTCTATTTACATGCATCTATCCAATCTTTCTTT 64790 30 100.0 36 .............................. AATAGCTATAGCCAATAATCCTATTGTAATTAATAA 64856 30 100.0 36 .............................. TAATATAGTTGTCTTATAAAAAGACTTGCTATTTTA 64922 30 100.0 36 .............................. GCTTCTCTGACTATTTCTTTAGCAAAATTATTTAAT 64988 30 100.0 36 .............................. ATTTCAGCTTATACCATGTCAAGTTATGAGTCTAAA 65054 30 100.0 35 .............................. AATAGTGCCGAAGATGCTTTAATAAAGATACAGAC 65119 30 100.0 36 .............................. TATAATTAACATATAAAAAGAATAAGGAAATATATT 65185 30 100.0 36 .............................. TAGTTTATCAGCCCCAACTACTTTATTACTACTTTG 65251 30 100.0 37 .............................. AAATGGACCTGAAGATAAATATGTATACATAGGTCAG 65318 30 100.0 36 .............................. ACAGGTAAAAAAAATCGAAAGATACATAATAATAGA 65384 30 100.0 36 .............................. TTTACAATGTCAATCGTATGGTCTTTTTTATTCTTC 65450 30 100.0 36 .............................. CGATAATCCCAATGCACCAATTTATAGAGAATATAT 65516 30 100.0 34 .............................. CCTATCGCTAGGATTATTTCAAGAGGTTAGACTA 65580 30 100.0 36 .............................. AAGCTGTTAAGTTTACAGACGAATATTCCAAAGCTA 65646 30 100.0 36 .............................. TTGTACAGAAGAAAAAGAACCTTTAATGAGTAAGTA 65712 30 100.0 36 .............................. AAAATAGCCTTTATATGCCTTTATATAGCCTTCTAT 65778 30 100.0 35 .............................. GTAGACGAAGCTAAAAAGCTAGGGCAAAAGGCTGC 65843 30 100.0 36 .............................. GTTGGCAACAGTATTTGAAGGTAGAGGCGCAAAGTC 65909 30 100.0 36 .............................. ATGTTGAATCTATTCAAATATTGAACTTTGATATTA 65975 30 100.0 35 .............................. ATAGAAAATGAATGTCAAAACAAAAGTGAAATATC 66040 30 100.0 35 .............................. TGGCAGATAAAGAACTAGGTGGAGGTATTTTATAA 66105 30 100.0 36 .............................. GTTATCTAGTACTATACAACAACAATCTAAAGTCGT 66171 30 100.0 35 .............................. ACAACATTGCTTGCGCAGTTGAACTCTTGGAAAGA 66236 30 100.0 36 .............................. GACTATATACAAAACTAATAATGGTAAGGTATTTGC 66302 30 100.0 36 .............................. TATTATAATCCTCTGCTTTTTCAACGAACCAATCAG 66368 30 100.0 37 .............................. TTTAAAATATATTTATCAATTTTTAACATTATTTTAT 66435 30 100.0 36 .............................. TATTTTAAGTGGAGACGCAGCTGGAAACTTATTAAA 66501 30 100.0 35 .............................. AATAAAGGTTCTATAACTGCTTTAATGTCAGCCGT 66566 30 100.0 36 .............................. AGAATATATTAAAATAAATAGAACTCTTGAAGCTGG 66632 30 100.0 36 .............................. TATTTCTTTCATTACATTTTTAGCTTCATCTTTTTT 66698 30 100.0 36 .............................. TTCTTTTTTTATGTTTATAAGTATCCTTTTTCTTGT 66764 30 100.0 36 .............................. AAAGTATCTTAAATTTTTCTTATATAGTGATGTTAC 66830 30 100.0 36 .............................. CACAATACTTATAACCAAAAAAGATTATAAAGTATC 66896 30 100.0 36 .............................. GAAAAAATTTTTATTTTTCTTAGAACCTTTTTTAGA 66962 30 100.0 36 .............................. ATGTTGCGAGAAATGCGGTGCAAGTGTAGATAGTTC 67028 30 100.0 36 .............................. AAGTTCAAAAGAGTGCTTGGACGCTTACAAGGAATA 67094 30 100.0 37 .............................. GTAAAGCCGAGCAGGCTCAAAAGGAAAAGGAACTTGT 67161 30 100.0 36 .............................. TTTTAATTGGTTTTAAAAATCTACAAAAAAATAAAA 67227 30 100.0 35 .............................. CACTATTTCTAATTACGCATATAAAAGTAATACAG 67292 30 100.0 37 .............................. ATATGCCTGTGCTTATAGTAGTAGTTCCTTTATGTTT 67359 30 100.0 35 .............................. TTAGTCATTACAATGCTTGCGAGTTTTTCTTTTAC 67424 30 100.0 36 .............................. GAAAAATGTATATAGACCCTTTCGCTTATAATGAAT 67490 30 100.0 36 .............................. AGTGACTAGAAAGATTAAGCGCTGGGTAGATGCTAG 67556 30 100.0 36 .............................. ACGGCTAATAGAACTCAGCGCAGGGCTAAAAAGTAA 67622 30 100.0 36 .............................. TGCAACTACTCTAGTTTGTGCAGGTGTTAAATTTGC 67688 30 100.0 36 .............................. TTTTAGATTAAATAAAAAAATTAAAGGTTTAAATTT 67754 30 100.0 36 .............................. TTTAGATAATATTGAACTTGGTTATTCTTGTACTTT 67820 30 100.0 37 .............................. TTTTCCAATTGAGGCAAACATTTAGTAATAAATCCCT 67887 30 100.0 36 .............................. TGTTAACCCTCCAGTAGACCCCGATATTCCTACTGT 67953 30 100.0 36 .............................. AGCTTATAACAGCATCTATATTATCTAAAGCAATTT 68019 30 100.0 36 .............................. CTATTTTACCTTTTTTCTTACCTTTGGAAATATTTA 68085 30 100.0 37 .............................. CTAGAAAATAACTCCTAAATGTATTGACATTAAGTCA 68152 30 100.0 36 .............................. TGTTATTGCTAATTTTCCACTTAATCAACAAATTCT 68218 30 100.0 36 .............................. AAGTGATATTTTTCATTATAGAATAAATAATATGAT 68284 30 100.0 36 .............................. ACTTGAAAAATTAATTCAAGAACTTGAAAATATTAA 68350 30 100.0 36 .............................. AGATAATAGAAAAATTTTTCTTGATATTTTAACTTT 68416 30 100.0 36 .............................. AATGGGATATAAATCTTTTTTCTTTAATATTTGGTA 68482 30 100.0 36 .............................. AAGAGGTAAAGAAAATCAAACATTAGCTATTATAGA 68548 30 100.0 37 .............................. TAGCATCTTATTCAGTTTATAATAATAATTTTTCTAC 68615 30 100.0 36 .............................. TCTTAATGGTTGTTTGTTTCTTATAACTAAGTACAA 68681 30 100.0 36 .............................. TGTTAACCCTCCAGTAGACCCCGATATTCCTACTGT 68747 30 100.0 36 .............................. TTTATGTTATTAGATGTGTTAACTGGATTTGACAAA 68813 30 100.0 36 .............................. TGGAATGAGTATTGAAATACCAAAGGTTTCTGATGG 68879 30 100.0 36 .............................. AAAGGTTGTTTTTTGTGGAAACGTTATTGAAATTTA 68945 30 100.0 35 .............................. TCTTATTCTGGGTCTGGTTATTTTGCTAATTTGAA 69010 30 100.0 36 .............................. TGAGGGAGGTATAAAATTCAATCCTCGTATGTGGAA 69076 30 100.0 34 .............................. CTTTTAGATATAAGGATAAATATGCTCAACTTTA 69140 30 100.0 36 .............................. GAGATATTTTAAAAGTCGAAATTTATTAGAACCAAC 69206 30 100.0 35 .............................. AGTTGGTAAAAAGTAGAAAATTAGTAAAAATGTTA 69271 30 100.0 36 .............................. TTTGAATGATTCGCATGAAAAAAGACTTGCATACGC 69337 30 100.0 36 .............................. CCATTTTAATCTTAAGTTGACGTATTTAGGTGTTGT 69403 30 100.0 36 .............................. TTTGCGTATTTAACTAAAAAATCTACAGTCAATTCT 69469 30 100.0 35 .............................. GGTTATATGTTTTACAACGGAGAATATAGGAATTG 69534 30 100.0 36 .............................. ATATAAAAAATAATAAATAAAAAGGGGATGTTTTTA 69600 30 100.0 34 .............................. ACCTTGTTAATCAAGGTACTTGGAGTCCTAGTGC 69664 30 100.0 36 .............................. TTCTGATGCGGGTACTTTAGATATTCCAGTTGCGAA 69730 30 100.0 36 .............................. AAAGGTTGTTTTTTGTGGAAACGTTATTGAAATTTA 69796 30 100.0 36 .............................. GAGTTGGTAAAAAGTAGAAAATTAGTAAAAATGTTA 69862 30 100.0 35 .............................. TTTCTGTATCAATTGAATCGCCAAGAACATAACAA 69927 30 100.0 36 .............................. ATTTGTTTCTGATGAATTATGTTTTGAAATAATAAA 69993 30 100.0 36 .............................. CTTTTGTACTTGGACTTATTTTATTTACTTACAAAT 70059 30 100.0 36 .............................. AATCTATCGAGGGCAAAACAGGAGCAGGGTCAACAG 70125 30 100.0 36 .............................. TATTTTCTTTAAAAGTTAAAGTTAAAAAAGAACTCT 70191 30 100.0 36 .............................. CTTTTTTTGTCAGTACCTCCCCCAAAAGGTGTCCAT 70257 30 100.0 36 .............................. GTAAAAAAATCTATGGATAATAAGTTTTGGTCAGAC 70323 30 100.0 36 .............................. TTTCATAGAATATATCCTCTCTCCATCTAATATCAT 70389 30 100.0 37 .............................. CTTACTTTAACAACACATGAATAGGTCATAAGTTCTG 70456 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 104 30 100.0 36 ATTTAAATACATCTCATGTTACTGTTTAAC # Left flank : TCTTCGCTCAAATCTACAAAAACTATTTTTTTGTCGGTTTTGTTTTTTTCTATAAATTCAATTTTTCCTTTTCTAACAATTCCTTTTTCTTTTAATATTTTTAAGTATAAAAGAACTTGCCATTTGACAGCTTCTACATCAGCATCAGACTTTTTAATCTCTACTAAATATTCTTTTGTTAATTTATCTATCTTTATATTTTCAATTGCAATTTCTTTATGTTTTGAATTTTTTTCTTTTAGCTCATGAAGAATTCTACCTATTTTTACATCTTCACTATTTTCTTCTAGGTTTATTCTATTGCCAAGTAGCCAACATTGTCTTTTACAATGGAAATAGTAATTTATTAAAGTTCCTGTAAGCTTCATAATATCACCTATTTATTTGATTATTTATATATAAGTATATCATATATTGTCTTATTCAGAATATTAAAATTTATAATTTTACAATATAATTTACTATAAAATTATTTTTATTTAATTTAATATTGTATAATA # Right flank : CCACTGTAAAAGCAATATCTCTTAAAAGGATATTGCTTTTAAACACATTGAAAAGACTGATATATAGATTTTTTATCCCAGCTAATCATAAAAAATCTATAAAAGTTATAAAATATTTAAATTTCAATACTTAGAAACTATTCTTCATTTACTAGCTTGGGATAAATTTTAATTACACTATACTATATATCCTATTTCTAATCTAACCTTACCATATATACTCATGTTCTACATTTTCATTAAATTTGCTTCTATCAAATTTACCATCTGTAAAATACTGTTCACCATCATCAATATAAAAAATATCTCCTATATAATCATTAAATGAATTATCAAATTTACGAAGCTTATATGTAAAATAATCTAATTTTTCCATAATGTCAGACATCTTTACTCTTTTTTCAGAATAGTCAATATCATTATTTTTTAATAGAGAAACATAATCTTCCCAAACATCACTTCCTACAACTATATTTCCAGATTCATCTTCTACTTGAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTACTGTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [95.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 49861-50940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000047.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 49861 29 100.0 36 ............................. TTAGCATGAAAATACTCATCACTATTTCTTCTTATA 49926 29 100.0 36 ............................. TTAAATAAAGAATTTAATTTATAAATAGTATATAAA 49991 29 100.0 37 ............................. CGATTAGAAAGTCTATAAGTCAATAATATAAGTCCAA 50057 29 100.0 37 ............................. TAAATAATGACACAATAGATTCATCTGTAAAGTATAG 50123 29 100.0 37 ............................. TGCAAGATACAACAAACTTCTCAAAGCATCTACTACA 50189 29 100.0 36 ............................. CCAGTATTATACATAACAATAAATTTCGGATAAAAA 50254 29 100.0 36 ............................. CATGCAGCTTGTCTTATATCTGTAAAGTCTAATTTA 50319 29 100.0 37 ............................. AATTTACTGAATGATAACTTGATAGAAGTTGTTGCAT 50385 29 100.0 37 ............................. GTGAATTAGGTGAATATGTAGGTGACATTGCTATTAA 50451 29 100.0 37 ............................. AAGGCTGATACTTTTATGGATTGGGTTTGGGATGTAG 50517 29 100.0 37 ............................. ATATGGTTTGTATCCAAATTCATCTATCCATTTTTTA 50583 29 100.0 36 ............................. TAAACCGCGCCCGTTTGTTCTGAAAACAACGTCTTT 50648 29 100.0 38 ............................. GCAAACGAATTAGCAAGTAAATTATATGTTCATATAAT 50715 29 100.0 37 ............................. TTTGAATTATCATTCACAAGTTCCCAGTTAGCTCCAT 50781 29 100.0 37 ............................. ATGGTCCAGCTACTACTGTCAACGCTATAAAACTTGA 50847 29 100.0 36 ............................. TATTGAATGGTCGAGAGTTGTAACTAGGCACTACAA 50912 29 89.7 0 .....G..........A......G..... | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.4 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATACAAGTAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGACATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATAATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTACATAAGTGGCTGTAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : TTTACTTATTCATTAAGAAACTTAACTGAGAGTTTGATTTATATTACTGAATTATCAAGAGTCTTAGAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAACAATCAAAAAGATTGCTCTAACATCATAACTAAATAGCTATATACCTACACTCACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAAGCCATAAAAATATTAGCAATTTGCTAATATTTTTTTTGTGAAAATTAATCTAATAACATATATAATTAACTTATAAAACATATATGAAGAGGTAAAACTATATGGCTAAAATTGACAATATGATGTCTATATTATGGATATTAAACTCAGATAAAAAAGTTACTGCAAAACAAATATCTGAAAAACTAGAAATAAATATAAGGACTGTCTACAGATACATTGATGCATTATCTGCTAGTGGAGTACCTATAATTTCAGATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 226272-227481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000047.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 226272 29 100.0 36 ............................. CAGAATATTGGTTAGAAAATGTGGTCATGACAGCTG 226337 29 100.0 36 ............................. ATGGAAAGAATTTGAGGATTTAAAAGTGTTGAAAGA 226402 29 100.0 37 ............................. TTTACAAAGCCTTTAGGTTTGCATTAAAAGAACACAA 226468 29 100.0 37 ............................. ATCGGAAAAGAAAGACCAAGAATGAATACTTACGCTA 226534 29 100.0 37 ............................. TAGTATAGAGTAATAGAAATGAATGTAAAAGAATTGA 226600 29 100.0 37 ............................. AGGCTACTTAATTGTGTTATTAATTCTTCCATGTTGT 226666 29 100.0 37 ............................. TTATCTCACCATCCTTTTTATCTTCGAAAATAAGGTT 226732 29 100.0 37 ............................. ACAGTTACCCCTTTTTTTATTAATTTCCTCATTTCAT 226798 29 100.0 36 ............................. TTGAAACAGGATAAAGATTATTTGTTTAATGCAACA 226863 29 100.0 37 ............................. TTAAGTGAAGGTCGGGTATGTCGGGAGTGTTGTTTAG 226929 29 100.0 37 ............................. AACAATCTGATATCCCAACAAATTAGCAATTGCTAAG 226995 29 100.0 37 ............................. TTCATCAACTTTATCTCTTAAAATAAATATTTTTCTG 227061 29 100.0 36 ............................. GTTTTAAAGGCTGGTACAGTTGGGCAGGAAAATATT 227126 29 100.0 36 ............................. ATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATC 227191 29 100.0 37 ............................. TTTGTTTTCTGCCCATTTACTTCTGTTGACAGTTCTT 227257 29 100.0 36 ............................. CTATTATGCAATTTTCTAAAGTCGGTTAAACCGATT 227322 29 100.0 37 ............................. GAGTTTGCAGGTGTTTTAGCAGAAGAAACTGTATTAG 227388 29 100.0 36 ............................. TGGATTGGAAAGTAGAAGAAGTTTCAAAGCTATTAG 227453 29 82.8 0 ................A.AA...C....T | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.1 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAGAGAATGTTTGTTATTGTTACTTATGATGTTGTTGAACCTAAATCACTAAACAGGATTAGAAAAATACTCAGAAAATATTTGACTTGGACACAGAATTCTGTTTTTGAAGGAGATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAAGGTTATTGATAATAGTGAAGATTCTATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGAAATTTATGCTAAAATAGGGTTTAACAGTTGGAATATAAGGCATTGAGAGTGTGTGATAATTATTATCAATTGCACTACTGTTCGCTCACGCAAAATTTGATATTTTTATTTAATTGTAATTGCTTGAGTATAGTATTTTCAATGTACTCAATTAGACCTATTTTGGG # Right flank : TAAAACATACATATTCTATAAATAATAACAAGAAAGCAATAAAAAAATGAGGTGAAATAAAATTTATGATAAGAAAATCAAATAACAAAGATATAGAAAAAATAATGGAAATATGGGAAGAAAGTACAATCAAAGCACATGATTTTATAAATAAAGATTATTGGAAAAATAACTACAATACTGTCAAAAACGAATATATGCCTATATCTGAAACTTTTGTATATGATGACGAAGAAGAAATAAAAGGATTTATAAGTATTATAGACAATGAATTTATAGGAGCATTGTTTATAAGTACAAATTATCAAAACTTAGGAATAGGAAGTAAACTTTTAGACTATGCACTTAAAGAATATAAAAATCTAAGTTTAGCAGTATATAAAGATAATAAAAAGGCAGTTGTATTTTATAGCAAAAAAGGTTTTAATATAGTAAAAGAACAAATAAATGAAGATTCAGGATTTAAAGAATATATAATGGAATATAGTAAACAACTTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7824-7167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000016.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 7823 26 84.6 27 TT.A.....A................ TTTTAATATTCCAATTATACAGTATTT Deletion [7771] 7770 26 96.2 35 .........A................ GATGAATACTAAGCTAAATGAAGTATATAGTGTTT 7709 26 96.2 39 ......................C... CAACTCGTTTATGCATTTATAACAGGTCTGCAAGGGTTT 7644 26 96.2 43 .....................C.... TTTAGTAAGAAAATCTGTTTCTTTTAAAAATATAGCGTTATTT 7575 26 100.0 39 .......................... CTGATTTCTATTGCTAATGTACTTTATGTAACGATGTTT 7510 26 92.3 38 ...........A.A............ CACTTCGTAAAATTGTATTTTTTAATGTTATGTAGTTT 7446 26 92.3 40 .........A......C......... ACATAATAAAAATGTAGATGCGAAGCGATTAGCTTCTTTT 7380 26 96.2 40 ......................G... TACTTAGTTTTAGTTACAGAATAGTTTTAATATGCTGTTT 7314 26 92.3 40 .......T...A.............. TGTATCTCATTGCAAGTGGATTACTCTTACTTATGCGTTC 7248 26 92.3 30 .........AG............... TTCTCTAATGCTTGTACTTGTCTATCGTTT Deletion [7193] 7192 26 88.5 0 .......A..........A...C... | ========== ====== ====== ====== ========================== =========================================== ================== 11 26 93.4 37 AAATACACATAGTGTTAAGGTTTAAT # Left flank : GTGTTAAGGTTTAATATTTAAATAGTACAGAAAGCGGAGGAAATAATAACAATTTAAATACACATAGTGTTAAGGTTTAATATCAATAGATGCAAATTCTTCTTTCGATTATCTTGATTTAAATACACATAGTGTTAAGGTTTAATAGAAGTTCACCCCCACAATTTAGGAAACCGTTTTACATTTAAATACACATAGTGTTAAGGTTTAATCACTGTAAACAAGCCATTTCTAAAATTAAGAAATGCTTACAATTCAGTAGTTTCAATTCCTATAAGCTTTTTATCCCAACTAATAGTTAAAAATAAGAATGTAGATATTTCAAATGCTATATTAATTAGCTTGGGATAATTTAATTATATCACTATATAAATTGACTTACAATATTTTATATAAACAATTTTTGGTGGTTGCTATTGATAAAAATATTTATAAAAATAAACAATATGGGGTTTGAAGTTAAAGAAGCTTCCATAATTGCTATAGAGGCTTCTTTTATA # Right flank : AGCTATAAAGAATCTATTTGTAAAATCAATAAATACTTAAAATTACTACATTTCAACTAAGCTAAGTCCTTTATCCCAATTAACAGATAAAAATAATAATGTAGATATTTCAACATATATACCAATCAAATCGGGATAAATTAATTATATCACTATATAAATCAACTTACAATATTTTATATAAACAATAAAAATGTTATACTTATTATAAAAATAATTTAAAAATAATATATTAAACATGAATAAAAGTATTATAAAATATAATTTTAAAAGGGGAAAAATTAAATGAAAAAAGTGAACTTAGATAGGATAAAAAATTATCCATGGGATTTAGAATTTGCAGAAAAGCAAACGTATGAGATGTGTATTGAGGCTATAGAAGAAGATGGACTGTTACTTAAAGATGTAAGGTGGGATGAACTTAATTTAACCAAAGAACAGATATATAACCTATATCTTAAAGCAGTAAATGAAGATGGTAATGCACTTGAGTATATAGA # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:-1.5, 6:0.25, 7:-0.00, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACACATAGTGTTAAGGTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 8112-8601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000016.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8112 29 100.0 37 ............................. TGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCT 8178 29 100.0 36 ............................. TCAAGATAATCGAAAGAAGAATTTGCATCTATTGAT 8243 29 100.0 37 ............................. TTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAAT 8309 29 100.0 37 ............................. TAAGTATTTTTGAAGGTGTGAAAGATTGTAGGTTTAA 8375 29 86.2 37 ...G...T........T.A.......... CATGTGGGATGACACCAACGATCACATTGTGCAATAA 8441 29 89.7 36 ..............T.G.A.......... TTCAATTATACAAACGTAACCTGCATAACTGTCTGC 8506 29 100.0 38 ............................. CTATTCTACTGTTATGTCCAGCTCGTACCCATATCCAG 8573 29 89.7 0 .......................AAA... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 95.7 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TACTAAAATTAGACCTTAACACTATGTGTATTTAAACCCTTGCAGACCTGTTATAAATGCATAAACGAGTTGATTGAACCTTAACACTATGTGTATTTAAACACTATATACTTCATTTAGCTTAGTATTCATCATTAAACCTTAACACTTTGTGTATTTAAATACTGTATAATTGGAATATTAAAAATTAAACCTTAACACTTTGTGTTTAATATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AGAAGCTTCTATAATCTCTATAGAAGCTTCTTTTTTTATCTTTCTTATTGTACTATATGGTCATTAGTGTCGTCCCACATACTGCCTCTAATCTCAAATTCAAGATTCTTTTCATCGCACAGCTTCTCTTTGCTCTTAGCAGTTCCAACCCCTGTAAGCTCTGGAGTCCAAACATCTAAGCTATAAAATCCGTCTTTTGTATTAGTCCCAGTGTAAATTTTAATAGGTTCTTCCACTCCATTTTTAGATTTTTTCTGCATTGTATATCTTAAAACTGTCTTATCTGCATTTGTACTTACAACTGTTACATCAAAAACTTTTTGGCTTCCAAAAATTCCTGTTGCAGATAAGGTCTTCCCATCTGCTGTTTTTACATATATATCTTTATAAATGTTTGGAGCCATATTCTGGTTTGTTACACTTAATCCTTTACTTGTACTTGTATTTCTTGTATCCCAAGCTTTTGGCTGTCTCGTTAAGGCATTCGTATTATATTCCAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1098-1487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000018.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1098 30 100.0 39 .............................. CCCAATATAATGGTGACCCAGAAGAATTCCAACATTATT 1167 30 100.0 36 .............................. CTGTAACGCCTTTAGTTACTAATGTATCTATAATAT 1233 30 100.0 34 .............................. TCATTTGTGGCTTTATAGCCTTATTTAAATCTTC 1297 30 96.7 17 ................A............. TTAATTACTAACGTATC Deletion [1344] 1344 30 73.3 33 CCCTGCT.........A............. CAGAAAAGAGTATAAAAGACAACTATATGTAGA 1407 30 96.7 21 ................A............. TACGTACATATATAAATTAAA Deletion [1458] 1458 30 86.7 0 ................A......A....GA | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 93.3 30 ATTAAACCTTAACACTTTGTGTATTTAAAC # Left flank : TTTTATATTACAGGCTTTAATCTCCATCCTACTTACGTTGAGGATGGAGTATTTCGCCTATTATTGATAAATTATATATCTTCTTCTTATTTAGATTAAGTTCATCCCACCTTACATCTTTAAGCAATCCCCCTTGTCGCTTTACTGCTTCTATACACATCTTATAACTTTGCTTTTGCATGTGTGCCAATCCCCAGGGGTATTTTTTTATCCACTCTAAATCTGTTTTACGCATTTACCTATCACCTTTTTATTTTCATAACATTATATATTATACTTTAATTTTATTTATAATAATCATACCATTTTTATTGTTTATATAAAATATTATAAGTTAATTTACTTAGTGATATAATATAAATTATCCCAAGCTAATTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTAGTTGGGATAAAAAGCTCATAGGAATTGAAACTACTGAATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTATTAATTTAGATAGCTTCTTCTTAATATTATTCAAACTCTTTTAAGAAATCAACATAAGTTTGTCTATGAACATTAACACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTATTGTAAATAACCACTTATTATATCTTTTTACTGCGAATACTTCTCTGGCCTTTCCTTGCTTTTCTAAATATTTAACACCAAATTCATCTAAATACTTTTCTTTAGCATTTACATACTTAATTGCACATATATTCTGCTTTAAAGCTTCTCTGCATATTTCATCAATCTGTTTCTTTGAGAATCCATCCCATTTTATATACTCTAAAGCTAATCCATTTTGCTTGACTGCCTCTAAACATATCTTTGGTGTTTGTTTGTTTACATATTGTAGACTACTTCCATTTTGCTTGACTGCTTCTATACAAATTTCTTCGGTTTGATTCTTTA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTTTGTGTATTTAAAC # Alternate repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2621-3135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000018.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2621 30 100.0 35 .............................. ATAACAAAAATAAATAGGAATAACAAAATTCGATA 2686 30 100.0 35 .............................. TTATTATCAAACCATATATCTCTATAGATACCCAT 2751 30 100.0 28 .............................. TATATAACAATCTGATTTATCTACAGTG 2809 30 100.0 36 .............................. ATAAATTCAAAGGGGGATTGAAATGAAAATAGTAAG 2875 30 90.0 31 .......T......C...G........... GCTATATACTTCATTTAGCTTAGTATTCATC 2936 30 93.3 28 ..............C...G........... GATTATAAATAATCCGAGGATGGTGAAA 2994 30 90.0 29 ..............C..CG........... ATCGCAACTACACAAAGATATATAAGAGT 3053 30 90.0 23 ..............C.T.G........... ATAGAGAGCATTAATTTGCAAAA 3106 30 80.0 0 .......T......C...G....A.A...A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 93.7 31 ATTAAACCTTAACATTATATGTATTTAAAC # Left flank : AATTCATCAAACTTCACATATTTAAGAGTCCCACCATCTTTGAATACCGCAATAAGATATAGATTATATAACTGTTCTTTAGTTAAATTAAGTTCATCAAATCTTACATCTTTAAGTAAATATCCATATTGTCCTACTGCTTCTATACACATTTCATAAGTTTGCGTTTTTGCAAATTTTAAATCCCATGGAAATTTTCTTATCCACTCTAACCCTATTTTCTCCATTTATCTATCCATCCTTATTGTTATTTTTTATAATACTTTTTTATATATAATATACTATTTTTCAATTTTATTTATCATAATTATATCATTTTTATTGACTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGATTATTAATATAATACCTACTTTCTATTTTTAACTATTGGTTGGGATAAAAAGATTAAATTAATTGAAACTACTGTATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AAGAGCTATCTATTAATTTAGATAGCTCTTCTTGTATTATTCAAACTCTTTCAAGAAATCAACATAAGTTTGTCTATGAACATTAATACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTACTGTAAATAACCATGTTCCTTCTTCCTTGATGGCTATTACTTCTCTCGCTTCACCTTGTCCTTCTAAATATTTAATATCAAACTCTTCTAAGTATTTTTCCTTATCTTTTATATATCTAATTAAATTCCTATCTTGCTTTAGAGCTTCTCTACAAATCTTATCTATTTGTACTTCTGATAGCATATGCCACTCTACATATTGAAGCGCTAATTCATTCTTTTTTAATGCTTTTATACATATCTCTGGTGTCTGTTTTTTTACATATTGAAGAGCTGAATAATCTTGTTTCACTGCTAATATACACAATTCTTCTGTTTGTTCTTTTACAT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACATTATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 9084-9705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000018.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9084 30 96.7 35 .............................A CATCTTCCTTTGTAAAATCATACTCACTAAGAATA 9149 30 100.0 36 .............................. AATATCTGCATATGTAACAAGTTATGCAAGAATTTT 9215 30 100.0 36 .............................. TCTTTTTCTAAGAACATTGCTAAAGGTAGATTTTTA 9281 30 100.0 37 .............................. AATACTTTGTTTAATTTACTATAAATATCATCTTCAA 9348 30 100.0 35 .............................. TCAAAATCTACAATTATTCCATATTTTTCTTTTAA 9413 30 100.0 36 .............................. CGAGTTCAAACAACAAGGTTTTATTGATATTAGCAT 9479 30 100.0 36 .............................. CCAATAGTTTATTCTATAGTAAAAGAAATACTTAAT 9545 30 100.0 36 .............................. AAAGAGGTTATACCTATTTTTATTTTTTCTGGGTTT 9611 30 100.0 36 .............................. AAACATTACTAATGAAAGGGTATTAGAATTTACATA 9677 29 83.3 0 ................T......-AA...G | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.0 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCCCCTCTATTTATAGTAAACATTATATAATACATACTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTTATAAAAAAACTGTTCTATTTTCTTATTTTAATAGTAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACATCTCTTTCGTGAAAGTTGCCTTTTTATATAATATTAACTTTAATTATATAATATGTATTTATTTGGAAATTGTCAATATTTTTAATGAATTTTATTGATTATATAAAATATTGCAAGTTAATTTATATGGTGATATAATTAAATTATCCCAATCTAATTAAGGTATTTATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAGATTAATTGAAGCTACTGTACTATAAGCATTTCTAAAATTAAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAAATTAGATAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAAACTCCCATGCTTCCATTTCTAATTTCGACTTTCTTGCCATCCAACTGTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTTTTCTCCTTTATTTGGCAGAAGCAACTTAAAGCATTCTTTTACAGAGCTATCAAATTCTTTGGAATTGGCAAATAAACCAAATCCAACTACATCGTTTTCTGCATTTACAATTCCCATTTCTACGTCCCAATCACCTTTGTCAGTTTTTTGCTTATATACATATGTTGTTTTGCCATCTTTCATCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTGCTAACACTCAAATCCACATCATTCTTATCTTCTTCTTTTTTATCCTGGTCCTTTACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACCAATATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 3083-3579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000021.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3083 30 100.0 38 .............................. CTTCTTTTATTAGCATGGTGAGTTAGGCAAATTTTAAA 3151 30 100.0 36 .............................. CTATCATTGTGGTGGTTATCCAGCTCATCTACATAA 3217 30 100.0 36 .............................. AATCTTTCTACCATAGATAAATACCACCTTTAATAT 3283 30 100.0 37 .............................. GTTGCATTATTATTATATACTATTGATATATTTAAAG 3350 30 100.0 37 .............................. CCTATTTTTTTTCTTTCTATTACATAATAAGAAGCTT 3417 30 96.7 37 .................C............ TATAATTTAGGTCTTATATTTTCTTTTGGTCTATCAA 3484 30 100.0 36 .............................. AATGTATCTAATTCATTTATTATAATATTATCCATT 3550 30 90.0 0 .......................A....GA | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAACATATTCCAGAGCATATCCAAATTCTTTTACTGCTGTAAGATATAAATTATAAGTTTGTTCTTTGGTTAAATTAAGTTCATCAAATCTTACATCTCTAAGTAGCATCCCCTCTTTTTTTACTGCCTTTATACACATTTCATAAGTTTGTGTTTTTGCATTTTTCAAATCCCATGGATGTTTTTTTATCCAATCTACATCTATTTTTTTCATTTGACTCTCCCTTTTTAAATTTTATTTTTATAACACTTTTATTTATATTTATTATATTATTTTTATTTTTTTTTATAATAAGTATATCATTTTTATTGTTTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGCTATTTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTATTTGGGATAAAAAGCTTAAATTAATTGAAACTACTATATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTAAATTAATAGATAGCTTCTTTACTATTCAAACTCTTTTAGGAAATTAAGATATATTTGTCTATGGACATTAATATCTTTCTCTGGGTCAAACCCTCCACCTTCATTATAGATTCTATAAATAAAAATTTCTTTGCTAATATTATCTTGACAACCTACTATAAATAGCCATCTCCCATCTTCTTTTATTGCTATTACTTCTCTTACTTTACCCTGCTTTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATGTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGTTTTTCTACAAATTGAAGTGCTAATCCATTTTCTTTTACTGCTTCTCTACATATTTCATCTGTTTGATTATTTACATACTCCAAAGCTAACCCGTTCTCTCTTACTGCTTCCATGCATATTTCATCTGTTTGATTGTTTACATACTTTAAAACATATCCTCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 21270-21561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWC010000034.1 Clostridioides sp. ES-S-0145-01 CD-ESS014501gDNAQiagen-xx-EN-USA-2019-093-JS_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 21270 29 100.0 37 ............................. AATTTTGCTAGAATCGTTGTAAGCATTGGAGCTGTAG 21336 29 100.0 37 ............................. GTTAGTGACTATTCTAGAATGCAACAAGAAACAACAG 21402 29 96.6 37 ............................G CCAAGTTGAAAATTTAGAATCTATGTCTTTACACCAT 21468 29 89.7 37 .................CA.........G ATGGGAGCATTAACTTTAGCATTTGGAGCATTAGCAG 21534 28 86.2 0 ...............T....-.CT..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 37 GTATTATATTAACTAAGTGGTATGTAAAT # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATACTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTTTGAACAAATACAGAAAACACTTATTTAAATAGTAAGTGTTTTTGTTGTGCTTAAATTTAATCAGTTATGTGAAATTATTATGGAATAATATTACAAATAATTAATGAAAAAATTATTAATATATTATATAATTGAACTAGAAAATACATTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAAGTTGATAAAGAAGATAAAAAGAAATTAAAAGAGCAAGAAGAAATACAAAAATTCATGAATAAGTATCAATTACAAGATTTAAATGAAAAAGATTTAACTATTTTAAGAAGAATAGCAGATGATTTATTTGCAACTGGACTTATAAAAACAGGATTAGCATTGAGTTTTACAAAAATAGAAGAACAAACTAAAATAAATTATCTTAGTGCTTTAGTTGAGCAAAACTGGATGATAATTAGACAATTATCTCAATTGAATAGCAATATAGAAAAACTTGTAGAAGATAAAAAATAATGGACTGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //