Array 1 962614-965448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030190.1 Salmonella enterica strain SA20104250 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 962614 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 962675 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 962736 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 962797 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 962858 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 962919 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 962980 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 963041 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 963102 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 963163 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 963224 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 963285 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 963346 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 963407 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 963468 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 963529 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 963590 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 963651 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 963712 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 963773 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 963834 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 963895 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 963956 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 964017 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 964078 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 964139 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 964200 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 964261 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 964322 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 964383 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 964444 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 964506 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 964567 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 964628 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 964689 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 964750 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 964811 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 964872 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 964933 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 964994 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 965055 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 965116 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 965177 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 965238 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 965299 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 965360 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 965421 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 982060-983980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030190.1 Salmonella enterica strain SA20104250 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 982060 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 982121 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 982182 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 982243 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 982304 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 982365 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 982426 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 982487 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 982548 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 982609 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 982670 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 982731 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 982792 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 982853 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 982914 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 982975 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 983036 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 983097 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 983158 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 983219 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 983280 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 983341 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 983402 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 983463 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 983524 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 983585 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 983646 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 983707 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 983768 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 983829 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 983890 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 983951 29 93.1 0 A...........T................ | A [983977] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //