Array 1 271800-275460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065313.1 Turicimonas muris strain YL45 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 271800 37 100.0 34 ..................................... TTTTTCCACTCAGAAGCTGCTGAATAAGACTTCA 271871 37 100.0 35 ..................................... TTAAAGCCGGTAAAAGAGTCGATTGAGATGGTTAC 271943 37 100.0 39 ..................................... TTCTTACCGGGATCCTAAGCAAAAGTCAGCGGATTCGGC 272019 37 100.0 39 ..................................... TTCTTACCGGGATCCTAAGCAAAAGTCAGCGGATTCGGC 272095 37 100.0 35 ..................................... TTCTACTAATTTTCTTGTTGCACGAGGCCACTTTC 272167 37 100.0 35 ..................................... TTAAGGATTGCTTGTTCACCTAAGTGAGCAAGGGA 272239 37 100.0 35 ..................................... TCCTCTTTAAATTCACAGAAGGAATCATCGAAAAG 272311 37 100.0 36 ..................................... CTTGACGAAGGTCATTAATCGTAATTGCATTGACAC 272384 37 100.0 36 ..................................... TATGAATTTTTCTTCCGGTTCTGTTTACGACTATTT 272457 37 100.0 35 ..................................... TAGAAATGATCTACAAGACCGGGAACACCATAGAC 272529 37 100.0 39 ..................................... TAACAGCCGTTTGGTCCAACCGATTAAAAACTGAATATT 272605 37 100.0 36 ..................................... CAAGAGGCGTCCCAACCACAAATCCACCAGAGTAGC 272678 37 100.0 35 ..................................... GATGAGAATCTTCAAAATTCTGTAAATGTTCCGAC 272750 37 100.0 32 ..................................... CGTAAAATTCGTTACTTTGCTTGCGGTGAGTA 272819 37 100.0 37 ..................................... TGAATGAATCACCGGGAAGGACTTCGTCAACGTAAAA 272893 37 100.0 33 ..................................... CGCGTGGTATTCCTACTCTAAGAAGACTAGTAA 272963 37 100.0 34 ..................................... CGCGATGATTCGCTGTATTCATGAGTCAAAAATG 273034 37 100.0 36 ..................................... TGATTACATTAGTCGGATTCCTCGTGCACAATATGG 273107 37 100.0 36 ..................................... TCATACCAGGCTGATTAAGCACAGTAGATCCAATAC 273180 37 100.0 36 ..................................... TACTTCTTTTGCCAACGGCACTGTTTTTGACTACTT 273253 37 100.0 36 ..................................... TCCTGACCCTGTTTCGAATTTCAATCTTTTGAAGCG 273326 37 100.0 35 ..................................... TTTAACAAGTCCTTTGTGGAACATGGTTATATTAT 273398 37 100.0 37 ..................................... TGCAAGTGTGCTCGTCCTATGCCGGTTTACGGTGTAC 273472 37 100.0 33 ..................................... GCACTGACCGCACGGAATTTGAAAATGCGTATA 273542 37 100.0 37 ..................................... GAGGTACTCGCTACACAGAAATTCTCCGGTCTCATTT 273616 37 100.0 36 ..................................... GCCTGACGCTCGTTTGCAACGGCCGGAGTACTTGGG 273689 37 100.0 37 ..................................... TTGCTAATTTAGGCTCTTCGCTTCTGTCTGACGCTAC 273763 37 100.0 35 ..................................... GGCGCCACCAACACCGCCGGATAAAAAACTACCAA 273835 37 100.0 35 ..................................... ATACACTGACCGCAAGGAATTTGAAAGTGCGTGTA 273907 37 100.0 36 ..................................... AAAGAAGAAAGTTTCTAAGTAGACGTTATCCATGAA 273980 37 100.0 37 ..................................... TTTCCAATCATCCTTCCGATTTTAGTCTTGTCTGGAT 274054 37 100.0 34 ..................................... GACGTAAAATTCGTTATTTCGCTTGTGGCGAGTA 274125 37 100.0 34 ..................................... CTCGACCCCCCAACCTACTGATGTCGGTAATAAG 274196 37 100.0 35 ..................................... TTCCAGATTCAGAAGTTACTAGAGCGTGATGCCCG 274268 37 100.0 38 ..................................... TTCGATGATGCTACTCGTTCTTTTCAAGGCATCTATTT 274343 37 100.0 34 ..................................... GACGTAAAATTCGTTATTATGCTTGTGGCGAGTA 274414 37 100.0 37 ..................................... GCTATTTTTGATTCTGTAGCTAATGAGTACAATCCTC 274488 37 100.0 34 ..................................... GCAATCAACCTACGTTATTTAGGTATTTTAATTC 274559 37 100.0 36 ..................................... GATAAGATTTTCGTTAAATACGGAAACCGCCTCTCA 274632 37 100.0 34 ..................................... TAAGAATAGCTTGTTCGCCTAAGTGCGCCAGAGA 274703 37 100.0 34 ..................................... TTGACTGCAAGTGTGCTCGAGCTATGCCTGTTTA 274774 37 100.0 36 ..................................... CGACACCGGATACATTAGCAAATCCGGCCCTTACAC 274847 37 100.0 36 ..................................... GCGGTTGAATGTCTCTTCGCCGTTAATCTTTGTTAA 274920 37 100.0 34 ..................................... TGAAATTTGAAACAGGGTCAGGACCGTCACCCAT 274991 37 100.0 35 ..................................... TTGGCAGCTTATGGTCTTGCTTCTGATGTCCGTCG 275063 37 100.0 34 ..................................... CCAAGAAAGACAAGACTAAAATCCATAGGATGAT 275134 37 100.0 36 ..................................... ACAACAAACGTCTAATACGAACGATGTTTCCCCGCA 275207 37 100.0 35 ..................................... GACGCAACTTACTCAACAGTTGCTCAATCGTGCTC 275279 37 100.0 36 ..................................... TCAATCGTGCGATGTTAGAGACGCAACTTACTCAAC 275352 37 100.0 35 ..................................... TTCAACAAATCTTTTGTTGAGCATGGCTATATCAT 275424 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 100.0 36 GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Left flank : CTTTTTGCATGGGTTGCAAGTACCGTAGGCTTAGTCGAAAAAGGCGCTGAATTCTTATTAGCATTGTCTGATAATCCTTGGGTTCTCCTTGCGCTTATCAATATCATCCTGTTACTTGCAGGAATGCTTTTAGATGCGATTTCTATTTACTACGTCTTACTGCCCTTCCTTCTTCCATTGATCAGGCACTTCGGCTGGGACGTTGTATGGTTTGGCGTAATGATGACGGTTAACTTGGCCATCGGTCAGATTACTCCTCCCGTGGCGGTTAACTTATACGTGGGAGCTCAGATTAGCGGACTAACGATGGAAGAAATTACACCTGCGGTTATTCCTCTGCTGATAGCTGCGGTTTTGGCGTTGGTACTAATCATTTACGTACCCTGGTTCAGTACTTTCTTGCCAGCGCTTTGGGGCCTATAAACCTTCGTCATAAAGTTTTCAGTTCAAGTATGTTGTACTTTTGCTACTTGCGTCTCGAGTTTCTCCAAAGGAGAAAG # Right flank : CCCTCAGCTAATGCTATGAAATTTATAAATTTTATTTTGTGTTAGCTGAGGATTTCTTCGAAACAGTTCAAACTGCACGAAAAGTGCCATAATTTTCGAAAAATCTTATATTCACCCTCCCTATATCATCTTCAAAATATAACCCCCTATCAATCAGGAGCTCCCGCCGAGTTAGTTTTGGTTTTTAATTGAAAAGTACTCAAACTTGTCGATTTCAGCAAAATTGAATCTTTTTCTGCCCGAAGAATGAGATAGACCAGAAGTTAAGTTTCCGTTAGACATCTTTCCGAACAATAAGAAAGAATCGCTGGAACGTGACTGCAAAAGAAGTTTTCAGCTCCCAGTTTTTCGAATCGTCTTTCCTGGGAGAGCTCGGAAAGGTTCTTTCTATTTCCAGCTCTTCGACTTATCTTCAACAATGAAATTGGTGACTCTGACAGTACTGATCAACTTTTCATCTTTATTAAAGATGTCTACATTCCAGATGTGTGTTCGGCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 296072-292794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065313.1 Turicimonas muris strain YL45 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 296071 37 100.0 35 ..................................... AAGGGTGAAAAGAACACCCCGATCACTATTAAGCC 295999 37 100.0 34 ..................................... CGCATAGCTTCCCGCTGTTGTTCAGCCTGTTTCT 295928 37 100.0 36 ..................................... TCATCTGCTTTATGTCCTCGGCCGTGAGCCGATTTT 295855 37 100.0 34 ..................................... ATGTCAGCGGTCTAAATATCCACATTGATGAATG 295784 37 100.0 36 ..................................... TTACCGTGGCGTGATAGATGGACTAACATCGTTTAT 295711 37 100.0 34 ..................................... TTCAATCAATCCTTGCTGGAAGCGTTTTTGTCGT 295640 37 100.0 36 ..................................... ACGGATACCTTAGCGTGGACTATTCGGCCCTCACAG 295567 37 100.0 34 ..................................... AAAAATCTCATGGCCAGAGCACAAGCCGCTCAGC 295496 37 100.0 36 ..................................... AGTGTCCAAGAATTGCCCAACGGCCGCAGGAAGATA 295423 37 100.0 35 ..................................... TATTGGCTGTCGGTTAGCTCGTTCTGCTGATGCAA 295351 37 100.0 35 ..................................... TTGAAATTCGAAATCGGGTCAGGACCATCACCAGT 295279 37 100.0 35 ..................................... CTAACGTTAAACCTAACACCCTCAAAACCAACAAC 295207 37 100.0 36 ..................................... CGTATGTGGTCTAGACGTTCTAGATTCGATTTTTAC 295134 37 100.0 35 ..................................... AGATTCGATTTTTATTGGCCGTCTCTTGCTCATTT 295062 37 100.0 36 ..................................... GCCTAATGAAAGTGCAATGTTCAAGACGTTGCCTCA 294989 37 100.0 34 ..................................... AAAATCGCAATTGAAAATAATTGCATGGTAATGA 294918 37 100.0 36 ..................................... CCACAAGAGGTGCGCTGTCTGGGCCGGGATGGGCTT 294845 37 100.0 32 ..................................... TAAAGAATGCGATCCGCTTGCGTATCTGCTGA 294776 37 100.0 34 ..................................... CGCATAGCTTCCCGCTGTTGTTCAGCCTGTTTCT 294705 37 100.0 36 ..................................... TCATCTGCTTTATGTCCTCGGCCGTGAGCCGATTTT 294632 37 100.0 34 ..................................... ATGTCAGCGGTCTAAATATCCACATTGATGAATG 294561 37 100.0 36 ..................................... TTACCGTGGCGTGATAGATGGACTAACATCGTTTAT 294488 37 100.0 34 ..................................... TTCAATCAATCCTTGCTGGAAGCGTTTTTGTCGT 294417 37 100.0 36 ..................................... ACGGATACCTTAGCGTGGACTATTCGGCCCTCACAG 294344 37 100.0 34 ..................................... CAAACAGTATTCAGCGGTTAGGAATGGACCAAAA 294273 37 100.0 37 ..................................... TCATTTGCAAGGGAAAGTGCGCTATTTAAACCAGTAC 294199 37 100.0 36 ..................................... AGTGTCCAAGAATTGCCCAACGGCCGCAGGAAGATA 294126 37 100.0 35 ..................................... TATTTAGTTCCGTTTTATGTCGATGAAGTTTTGCC 294054 37 100.0 35 ..................................... TATTGGCTGTCGGTTAGCTCGTTCTGCTGATGCAA 293982 37 100.0 35 ..................................... TTGAAATTCGAAATCGGGTCAGGACCATCACCAGT 293910 37 100.0 35 ..................................... CTAACGTTAAACCTAACACCCTCAAAACCAACAAC 293838 37 100.0 36 ..................................... CGTATGTGGTCTAGACGTTCTAGATTCGATTTTTAC 293765 37 100.0 35 ..................................... AGATTCGATTTTTATTGGCCGTCTCTTGCTCATTT 293693 37 100.0 36 ..................................... GCCTAATGAAAGTGCAATGTTCAAGACGTTGCCTCA 293620 37 100.0 34 ..................................... AAAATCGCAATTGAAAATAATTGCATGGTAATGA 293549 37 100.0 35 ..................................... CAACAGACATCGAACACTAACGATGTTTCTCCGCA 293477 37 100.0 35 ..................................... TTCGAGCATATAACCTTATTTGGAATGAGTGGTTT 293405 37 100.0 34 ..................................... TTAAATCCGATTTTGTCAGCAAACTCCGGCGGTT 293334 37 100.0 36 ..................................... TTTGAATCTTTACCTTCGGATATTCGTCTTCAGTTT 293261 37 100.0 35 ..................................... TTAACCCGTAGACGTTCCCGCAAAGTTTTCCGTAA 293189 37 100.0 36 ..................................... CTAGTAAAGGCAATCGTGCTATTACTTTTTCTTCTC 293116 37 100.0 36 ..................................... GCTAAGAAGATCAGAACGATAAGTAATAGCACCGCT 293043 37 100.0 34 ..................................... TTTTTCCTCCGCAGGCGCGAAATGATGAATGCAT 292972 37 100.0 34 ..................................... ACGGAACTTCTTCATTTTTCCGCCACAGTTGACT 292901 37 100.0 34 ..................................... ATCATCGCACGCAGCCACCCGTCAAACCAAGACC 292830 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 46 37 100.0 35 GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Left flank : AGTGGACGGGGTCTTTTTCTTCAACTCGGGAGATATTTGCCCGATCGAGTTTAAATTGGCTGAAAAAGAAGAAATAAGGAGAGCTCATGTGCTCCAGCTCTCAGCTTATGCGCTTGCACTGGAAGAAAAATATTGTAAATCTATACAACAAGGCTTCTTGGTTTTAGGGAAAAAGGGCAAAGTATTTGGCATAAGGATTGATGAGCAGAAAAGAGAAGATGTAAAGAAGTGCTTAGAGTACATCAAAGCCTCCCTTGTTGCAGGTCTATTACCTGAGAGCAGTGCAAGTGAGAGGCAATGTTGCCAATGCGAATATTTAAACTTCTGTGCAGATAGATTTTAGGGGTTTCCCTGGTTCCAATATTTAGAGGACAATAGGAGACTTTGTAAAATCGAAATAAACCCCCTTTTCCCATTTATTTAGCCCTCTTAAATTCTCTCGGGAAAGTATTATGACAACCTATGGATAGGCGACAAGTCTGCGCATTCAGGCTATCCAA # Right flank : CTCAGCTAATGCTATGAAATCTAACAATTTTATTTTGTGTTAGCTGAGGATTTTTTCGAAACACTTCAAACTGCACAAAAAGTGCCGAATTTTTCGAAAATTTTGATTTTTGGATAGATTTACCCACCCATTTTTCAATCAAAAAATCTAATTTATTTTGGTTCGGTTGATTCTTCGTTTCTAGAAATGTCAACTCCTTGTGCAGTCTTTCGTCTTTTAACTACCTAGATTTCCGTTTTACCTAATGCTGGTAGACCAGTTCTTAAATTTTTCGAAACAAAAATCTCGTCAACTCAATCAAAACAGAGTTTGTTCATAACGGCTTTACTGTTGTTGATAATCGTTCTTATTTGCAATATAATCAGCGAATTGAATAACGGAGATTCCGATGCCTCACGCAAATTTAACTCAAGTTTCATTGTGCGATGTACCTGTGAATCAGGTGTGCACTTTGGTCAAATGGGGAGCCTTGGACGAACCAACGGTTCAACGTTTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGATGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 3 2320383-2319842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065313.1 Turicimonas muris strain YL45 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2320382 37 94.6 36 ..............A............T......... TGGATTAACCTTAACCGCAATGTATCTGGCAGTCTG 2320309 37 97.3 33 ..............A...................... GAGGAATGACGCTCAAAGCTATTTCTCAAAAAA 2320239 37 100.0 36 ..................................... GAGCCGGGTCAACAATGTTGTTATTGTTCTTCCATG 2320166 37 100.0 34 ..................................... CTTTTACGACATCGAGCATGTCTCTAATACGACT 2320095 37 100.0 35 ..................................... GTATTCGCTCCCATGTATACGGACCTAAGTGCAAC 2320023 37 100.0 37 ..................................... TTAAGAGAGATCTCTATTGGCTTTCTCATAACAAGTA 2319949 37 100.0 34 ..................................... CTGGAAATATCACGTAAGAGTAAGTGTTAGAACG 2319878 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.0 35 GTTTCAGTTGAAGGTTGTAAGTTTGTACAATTGAAAC # Left flank : TCAGGTCGACACAGGTGGTGTAATGGTGAGACTTATTCAGAAAGGCATTGGATGGAGTTTTTTAAGACCTGCAACCTTGCTTCAGCATTCAGAGTTTGTTAACAGCCTTAATATTTTGCCGATGCCCTCTCCTGTAATCACAAGAAAAATCGTGCTGATTCATAAAAAGAACAGCCATATATTTGGCTATGAAGAGATCAAGCAGAAATCAATAGAATTCTTGAACGGACAGTTCAAAAGAGATCTAACACAGCTAATTCCTTGGCTCTATAAATCTTGATTGAGTGCTAGACAAAAATGCCAAAAGCTCTCTACCAAAAAAAATGCTGTTCTTTTATTCTAACATTCAAATTGATAGAAGGTTAGAATATGTCGATTTTTATTAGAATAGCGTGTTAGAAAACAAGGTCTGCTATTCTGAATTTTGAACCCTTCAATTTAGAATTTCACTCTGAGTGAAAAAATAATTGTAACCCTCGCCAACACGGTATTTCAGTTGA # Right flank : ATTTCGAAAAATTTTATATTCACCCTCCCTCTATTACCGAGCCAAAGAAACTTCCTCCTGTCCATCCGGTACTCCCTCCGAGTTAGTTTCCTTTGGAATTGAAAAGCCCTCCCCCGCTTGTTGTTTTTCGAAAAATTGAGGAATTCTCGCTGGCGTCGTCATTGGTTCCAGCGCCATCGTCACTCGTATTTTTTTACGATGTTTTCCTGGTAGCCAGTTAAGAGATTTTTGGCAACGGTGTCAGAGTGGCAGGCTATTTTGCAAGAATTAATCTATTCCCCCTCTTCCCTGTCTGTCTTTCTTGTTATCGCTTACTCATTTTTTATGTCTTTTTCTTTGTTCAGATCAAGGTCCCATAAAAAACTGTGATAGTTGAATTTCGTGATAACGAAAAAGTTAAATACTCAACTCCGGACAAGCCAGAATCCTGAATTCCCGTTAATCTAGGTGCATATTTAACAATTTCTTGCTTTTTCTTAATAACTTGCTGATTTAGTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAGGTTGTAAGTTTGTACAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 4 2379916-2379378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065313.1 Turicimonas muris strain YL45 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2379915 37 89.2 35 ............G.....G.....A.A.......... GAAAAATTTCTCAAAGTCTCGAAGGGCCAACTTCG 2379843 37 89.2 34 .....G......G....A........A.......... GAAGAGCAAAAGAAGATATGAAACGACAACTCTC 2379772 37 97.3 34 ...............C..................... TGGGAAAAATCATTGAAGAAGCGATGCGCCAAAG 2379701 37 100.0 35 ..................................... TATTAAACGAGTCAGCAGAAACTTGAAAGGTAAAG 2379629 37 100.0 34 ..................................... TGTTCGATGCACTGCTCATAATCTTTTTCAGAAT 2379558 37 100.0 36 ..................................... TTTAACAAGTTCTTTGATTGATGAATTAATCGCAAC 2379485 37 100.0 34 ..................................... AGCGTACAGCAACAGCAATAGAAGCGAAAGCCAC 2379414 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.0 35 GTTTCAGTTGAAAGATGTAAGTTTGTGCAATTGAAAC # Left flank : CCGCCTTAAGTTAAACCATGTTATGCACAAAAAAGGAATCTAAAATGGCACGCTATCAATATCCTATGACCGTCGAGTCAAACGGAGAAGGTGGATTTATCGCCTGTTTTCGTGACGTTCCAGAGGCTGTTACCGAGTCTTGGAGCTTGGACGAATTAAAAGAAGACGCACTCGACGCACTTATTACCGCTATTGATTTTTATATTGAGGACGGAAGAAAATTCCCCGCCCCTTCTGAGTTGCAAACCGGAGATATGGCTGTTGATTTACCTGCGTCTGTAGTTGCTAAGGTTTTGCTGTTGAACACTATGGTTCAAGCCCACATAAGACCCGCTGACCTCGCACGCAAAATGCATATTAAACCGCAAGAAGTTACACGCATCACCGATATTAAGCACTCAACCAAAATAGACACATTGCAAAACGCATTTAAAGCTCTTGGAAAAGAGCTTGTACTTGAACTAAGATAAAACCGATTTATCGATATGAGCCACCTAAGC # Right flank : TCTCAGCTAACCGTATGAAATTTTTAAATTTTATTTATAGTTAGCTGAGGAATTCTTCGAAACAGTTCAAACTGCATGAAAAGTACCGAAATTTTCGAAAAATTATCTCTTTGACTTAATAACACTGAGCTCTTCATAATTTAAATCAGAAACGTAATGATTCATCCGAGCTCCCAAAAGAGATTTTTCCTTTAGCGTCGCATCGTTCAACCCCTTAGAAAATAAAAGCATCAATTTGGCAGGGAAGATACAAGGAAGCGATCTTGTCATCCTTTACAAACCGCCAAAAAATCAATAGGTTGGATAATTCCAAAACTCGAATTCGGCCTCTCATGAACTCAAAGCACAATTTAGCCGGAAAAGTAGGATTGGAAGTTCTGCGGGCCTTCCCGCCGCACCCTTGATAGCATTAACTAGAAATATTCCTACTATCGGTGTTGGAGCCGCCAATCTGCGAGAGCGTCACGCAATTCTACACAGCAAAAGTTGTCGTTTAAATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGAAAGATGTAAGTTTGTGCAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA //