Array 1 4519-4195 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KV810428.1 Rothia sp. HMSC068F09 Scaffold194, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                    	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	===================================	======================================	==================
      4518	    35	  97.1	    38	..................C................	CGAGCTTCAGCGGCATCGATTCTTCGCGGGCGGGGTCC	
      4445	    35	  97.1	    37	..................C................	GGGGTTTGCTCGCCGACCTCGCTCTGTGAACCTGATC 	
      4373	    35	 100.0	    37	...................................	ACGGAAGAAAACAACACAAAAAGTTTTGCGTTGCAGG 	
      4301	    35	 100.0	    37	...................................	GTGGTTGGTGGACAGACTAGCCCGCAGGACGGCGGCG 	
      4229	    35	 100.0	     0	...................................	|                                     	
==========	======	======	======	===================================	======================================	==================
         5	    35	  98.8	    38	CCTCAATGAAAGCCCTTCTGAAAAGGAAGGGAAAT	                                      	       

# Left flank :   GACTCCGGTAGAGTACCGGGTTCAGGCCCTGCAGGAAGCCGTATAGCGGCTACTATTTAAAGCGTCCAAGTTTCGGGGCGCAGTTCAGTTCCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATTGTTTGTCTGATGTTTCGTCGGTCTTTAGGGATAGCCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATTGTTTGTCTGATGTTTCGTCGGTCTTTAGGGATAGCCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATCGTTCCACCAGTTCAGGAAGCCGTTGATTACCTGACCCTCAATGAAAGCCCTTCCGAAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGCCCTTCCGAAAAGGAAGGGAAATCCTGGCGATGGAATCGAAGCCGAAAAGGGTTATAGCCCC
# Right flank :  GTTCTCGCAGAAGAACAAGACCGTTGAAATTCCTAGCCTCAATGAAAGCCCTTCTGAAAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGCCCTTCTGAAAAGGAAGGGAAATGGTGCGCGCATCTGGTCGTCGCCTACCGAATCGGCATTGCCTCAATGAAAGCCCTTCTGAAAAGGAAGGGAAATTGGAATGGCATAGCACAAAGCCCCCCGGTCTAGCCACGCCTCAATGAAAGCCCTTCTGAAAAGGAAGGGAAATCGTGATAGTGAATCGGATGTCGTACGGGTCCTCGCGGGCCTCAATGAAAGCCCTTCTGAAAAGGAAGGGAAATCTCCTTATGCGGTCGTTGCATTACAGTGATATATGCCTCAATGAAAGCCCTTCTGAAAAGGAANNNNNNNNNNNNNNNNNNNNNNNNN

# Questionable array : NO	 Score: 3.00
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCTCAATGAAAGCCCTTCTGAAAAGGAAGGGAAAT
# Alternate repeat :   CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:57.14%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-5.10,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.37   Confidence: MEDIUM] 

# Array family : NA
//