Array 1 10299-11676 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVHK01000101.1 Deinococcus xianganensis strain Y35 Scaffold101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================================= ================== 10299 26 100.0 45 .......................... TCGGGCAACTGCCCACCTGACCCGGAGGTCACCCGTTTGGCGGGT 10370 26 100.0 45 .......................... GCGTCCGTCACGCTGATCCCATCGGCGCCGTCCGGTTTGGCGGGT 10441 26 100.0 46 .......................... ATCGTGCACGCCGCCCTCAAGGCCGGACGGGACCCGCTTGGTGGGC 10513 26 92.3 47 ....T.......A............. CACGCCACCAATGCCGCCGCCGCCGCCGATGTGCTCGCTTGGTGGGC 10586 26 92.3 45 ....T.......A............. GACCTCACCCGCGTCAGCGTGACCGGGGGGTGGGACTTGGTGGGC 10657 26 92.3 48 ....T.......A............. CAGATCAGCCTCCCCGGCTTCGGCCCGCTGGGCGCCGCTTGGTGGGCC 10731 25 92.3 45 ....-.......A............. GTAGGCGTCGCGGATGGTGTCGAGGGTGGTGGCGATTTGGCGGGT 10801 26 92.3 48 ..................CG...... AGCCCGTGCAGCCGGAGATGCTGCGACCCCTTCAGGCGTTTGGCGGGT 10875 26 96.2 45 .........C................ CCGCTCTTGAGGTCGTCGCGGACGACGTGGTCACGTTTGGCGGGT 10946 26 100.0 42 .......................... ACGTTCGGGTTCTGATCGTTGTAGTGCCGCATGTTTGGCGGA 11014 26 92.3 46 .........C.T.............. ATGTACCCCTACTGGCTCACGCCCACGCCCGGCACGTTTGGCGGGT T [11016] 11087 26 100.0 46 .......................... CCGAGGCGCAGGAGGAACGCCCGGAGGTGCTGGGGGGTTTGGCGGG 11159 26 100.0 43 .......................... GGGATCAGGCCGCTCTCGTGCGCCAACTGCGCGGTTTGGCGGG T [11161] 11229 26 96.2 45 ..............T........... ATGCTGGGCTCCTCGGACCTCCCGCTAGCCGTTGGTTTGGCGTAC T [11231] 11301 26 96.2 47 ........................G. ACCCTGAACCTCGTGCCCACCGACCTGGTGTTCTAGGTTTGGCGGGT 11374 26 100.0 45 .......................... ATTGGCCCCCTCGGGTTTTACGAGCATCACGCCCGTTTGGCGTGC 11445 26 96.2 109 ...C...................... GATGAGCGCACGCACCTGCTGAACAGCCCCGTCCACGTTTGGCGGGTCCTTCGGGGTGAAACAACACCATCACCGCCGCACACGAGGCGCACGGGCTGGTTTGGTGGGT 11580 25 84.6 46 .....-A....A...A.......... GACAACCGCGCGTTCGCCATGAAGCTCCACGACGCGTTTGGCGGGC 11651 26 88.5 0 TT.....T.................. | ========== ====== ====== ====== ========================== ============================================================================================================= ================== 19 26 95.4 49 CCTTCGGGGTCCGCCTGGATTGAAAC # Left flank : CGCACGGTCACTATGACCCCGTGGCGGGCGTGAAACTCGGCGTGAGCCAGGACGACCTGCACGTCCTGTGGTACGCCCTGACAACGGCGTTCACGCATACGCGCAGCGCCGCGCGGGGGGACATCCACGTGCGGGGCCTGTACGTGTTCACACACGAACACCGCCTCGGGAACGCCCTGGCGCACAAGCTCTTCGAGCGGGTCCAGATCATGGCGACCACCCCGGCACCGACGTCGTACGCGGACTACACGGTGACCCTGCCGGGTGAGGCGCTGCCGACCGGGGTGACGTTCACGCCCGTCACGCACGGCTGACACGGCCGCGCGAACCCCCTGCACGCAGTGAAACCCAGGGGGGTTCGCGCAACCGTGTAGGACACGGAACATCAGGACGACACGCGTCCGAGGTGCATGACAATCAGGGATGGAGGCAGGGGTTCGCGCAAAGGGGCGCGCGGACGGCGTGCTGGACGCATGAAAACGACTGCCTGTTTGGCGGGT # Right flank : TGCCACATGATCTGGTACTTGCCGAGCGCCCCGGTATTTGGCGGATCCTTCGGGGTCCGCCTTTTTCTTTGCGTGTCAGTCCTGCATGCGGGCCAGGAACCACCCCTGCGGGTGCGTCCTTTCCTTCTCGTCGAACCGGTGCACCTCCATGGTGACGGGGCCGCACTGGATGACCC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.77, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCGGGGTCCGCCTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 31988-27323 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVHK01000024.1 Deinococcus xianganensis strain Y35 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31987 29 100.0 32 ............................. ATCAGACGACCTTCACGGATGCGCTCGCCGTC 31926 29 100.0 32 ............................. TACGGGATTGACGGGCTTTTCATTCTGCAGCA 31865 29 100.0 32 ............................. GCGAGGCCACAGGAACGCCGTGAAGGGGCCTC 31804 29 100.0 32 ............................. TGATTCACCCCGTTGACCGGCGCCTTATCCGC 31743 29 100.0 32 ............................. CGCGCCCAGCCGAGCTTTGAGGCGACCATGGC 31682 29 96.6 32 ...G......................... CGCGCGAGGAACCGGTTGTCCAGCGCGATCTG 31621 29 96.6 32 .........C................... CGCGCCCAGCCGAGCTTTGAGGCGACCATGGC 31560 29 96.6 32 ...G......................... CGCGCGAGGAACAGGTTGTCCAGCGCGATCTG 31499 29 100.0 32 ............................. CGCGCCCAGGCGAGCTTTGAGGCGACCATGGC 31438 29 100.0 32 ............................. CGCGCGAGGAACCGGTTGTCCAGCGCGATCTG 31377 29 96.6 32 ................A............ CGCGCCCAGGCGAGCTTTGAGGCGCCCATGGC 31316 29 96.6 32 .........C................... CGCGCCCAGCCGAGCTTTGAGGCGACCATGGC 31255 29 96.6 32 ...G......................... ATCTTCTGAGCCCACTGGCTGAATTCGTTGGC 31194 29 100.0 32 ............................. GACCGCGGCATGCAGGGCGACGCCACCGCCAT 31133 29 100.0 32 ............................. TCCAGCTGGATGCCGGTCCCGTAGGTGTCCAT 31072 29 100.0 32 ............................. GGCCGCGCGGCATGGGCCGACAACGGCACCCG 31011 29 100.0 32 ............................. GTTGGCGCGAGTGCCTTCATGCGGGCGCCAAC 30950 29 100.0 32 ............................. GGGACGTGGCTACATTTGTTGTTTCAGTGCTG 30889 29 100.0 32 ............................. GGCCGCGCGGCATGGGCCGACAACGGCACCCG 30828 29 100.0 32 ............................. GTTGGCGCGAGTGCCTTCATGCGGGCGCCAAC 30767 29 100.0 32 ............................. GTTGGCGCGCGTGCCTACATGCGGGCGCCATC 30706 29 93.1 32 ...G.................G....... GTTGGCGCGCGTGCCTACATGCGGGCGCCATC 30645 29 93.1 32 ...G.................G....... GTTGGCGCGCGTGCCTACATGCGGGCGCCATC 30584 29 96.6 32 ...G......................... GCGCAGCGCCTCCTCGCGACCGCGCAGCTCGG 30523 29 100.0 32 ............................. TCGTGCGCCTCGTCCACGTGCAGCATGTCCAG 30462 29 100.0 32 ............................. ACCCGAGGGGAGAGGGCCAGAGAAAGCCCCCC 30401 29 100.0 32 ............................. GTCACGCGCCCACTCCAACCGGGGGGCGCGTA 30340 29 100.0 32 ............................. AGAACACGGACTCCGCTGCGGCGGACGTAGGC 30279 29 100.0 32 ............................. TGCAGAGCTACCTGGGCATTGAAGAGCGCGTA 30218 29 100.0 32 ............................. TGCAGAGCTACCTGGGCATCGAAGAGCGCGTA 30157 29 93.1 32 ....G................C....... AGACCACCGACTCCGCTGCGGCGGACGTCGGC 30096 29 96.6 32 ..............G.............. TGCAGAGCTACCTGGGCATCGAAGAGCGCGTA 30035 29 96.6 32 ....G........................ CTGAACGCATACAGCATCAGGGCGGACGGCTA 29974 29 100.0 32 ............................. GTGCCGGGGGTGCCTGCGGTGGTGGCGCTTTC 29913 29 100.0 32 ............................. ACGGACACGGTGTGCGAAGAGTGCCGCGCGTG 29852 29 100.0 32 ............................. CCGTTGGCCAGGGCGGCGGAGGGCAGGACGAT 29791 29 100.0 32 ............................. CGCGCGGCCTGCTGCGGATCGTCACCTGCATG 29730 29 100.0 32 ............................. GCCCGCAGCATCGCGTACCCGCTGGAAAGTGA 29669 29 100.0 32 ............................. TCGCGCAGTTCGGCCGCGCCCCGGTCCGCATC 29608 29 96.6 32 .........T................... TCGCGCAGTTCGGCCGCGCCCCGGTCCGCATC 29547 29 96.6 32 .........T................... GCCCGCAGCATCGCGGACCCGCTGGAAAGTGA 29486 29 96.6 32 ...G......................... TCGCGCAGATCGGCCGCGCCCCGGTCCGCATC 29425 29 100.0 32 ............................. CCGACACCGGACTGACCGCTACCGCCTACGCC 29364 29 96.6 32 ...G......................... TCGCGCAGATCGGCCGCGCCCCGGTCCGCATC 29303 29 93.1 32 ................G....C....... CCGACACCGGACTGACCGCTACCGCCTACGCC 29242 29 96.6 32 ...G......................... CCGACACCGGACTGACCGCTACCGCCTACGCC 29181 29 100.0 32 ............................. CTTTGTACGGCACGCGCACGAACATGACCCTC 29120 29 96.6 32 ...G......................... CCGACACCGGACTGACCGCTACCGCCTACGCC 29059 29 96.6 32 ...G......................... TCGCGCAGATCGGCCGCGCCCCGGTCCGCATC 28998 29 96.6 32 .........T................... CCGACACCGGACTGACCGCTACCGCCTACGCC 28937 29 96.6 32 ...G......................... TCATCGCGCTGGGGGGTGACGCCCCCCACGCG 28876 29 100.0 32 ............................. AGCACCCTGCTGTCCAACGGCGCGTCCCTGGG 28815 29 100.0 32 ............................. CGCTGGAACTGCAAACCCGGCCCCAGCCTGCA 28754 29 100.0 32 ............................. TGGACGACTACAACATCGCCCTGACGCACGGC 28693 29 100.0 32 ............................. TACCGGGACGAGGACGTGGACCAGATCCTCAC 28632 29 100.0 32 ............................. TTCAGGCGTGGCGTCCAGTACGGCAAGAGCGA 28571 29 100.0 32 ............................. GAACTTGACGCACTCATGGAGCAGCACCCGGA 28510 29 100.0 32 ............................. CCCCGCGTTCAGCAGAACGCGGGGAACCCCAC 28449 29 100.0 32 ............................. CCCCGCGGTCAGCAGAACGCGGGGAACCCCAC 28388 29 96.6 32 ...G......................... CCCCGCGGTCAGCAGAACGCGGGGAACCCCAC 28327 29 96.6 32 ...G......................... CCCCGCGGTCAGCAGAACGCGGGGAACCCCAC 28266 29 96.6 32 ...G......................... TCCTTCACGCTCGTGCTCAGCTTGCTGCCGAG 28205 29 100.0 32 ............................. GAGCATACCGGGCAACACCACACGTCAGCGCA 28144 29 100.0 32 ............................. GATTCTTAGAGGGTGGGCGACGGCGCAAGATG 28083 29 100.0 32 ............................. CTCAGCGCGCCGCTGGCCGCCGAGGGCGGCAC 28022 29 96.6 32 .........C................... CTCAGCGCGCCGCTGGCCGCCGAGGGCGGCAC 27961 29 96.6 32 .........C................... GAGCATACCGGGCAACACCACACGTCAGCGCA 27900 29 96.6 32 ....G........................ CTCAGCGCGCCGCTGGACGCCGAGGGCGGCAC 27839 29 100.0 32 ............................. GTCGCCGGGGACGCTGCCCGGGCCGCTCAGCA 27778 29 100.0 32 ............................. GTCGCCGGGGACGCTCCCCGGGCCGCTCAGCA 27717 29 96.6 32 ..............G.............. CGGGAGGCCATCCGCGCGCGGGACGAGGCGAA 27656 29 96.6 32 ................G............ TGCAGGCGCAGCCGCAGCGGCATCGTGCTCCC 27595 29 96.6 32 ...A......................... CGGGAGGCCATCCGCGCGCGGGACGTGGCGAA 27534 29 100.0 32 ............................. TGCAGGCGCAGCCGCAGCGGCATCGTGCTCCC 27473 29 100.0 32 ............................. TACCGGGGCGTCACGTCCGGCCTGCCCGCCCT 27412 29 100.0 32 ............................. CCCTGCACGCCGTCCAGCGTGAGCCCGCCCAT 27351 29 89.7 0 ..............G...........A.T | ========== ====== ====== ====== ============================= ================================ ================== 77 29 98.3 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTGCTCGGGGGCGACCACACCGACCCTGAACCCACTGCCCCCGGAGATCTCTGGGACCCCAGAGGCGACGTTCAGGGCGGCATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCACCCAGCCTACGTGGCGAACTCAGCCGCTGGCTGATCGAAGTCCAACCCGGCGTGTACGTCGGCAATACCACCGCACTCGTCCGCGACCTCCTCTGGGACAAGGTCGTGCAGTACGCCCGCACTGGCCGCTGCACCCAGCTGTACCGCGCACATAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCCCGCCGCACCCTCGTCACCCTCGACGGCTTCCAACTGGTTGCCGTTCGCAACGCCCGTCATGCAGAATTGCAGGGGGAATACGACCCTCCCGAGGACGATGACAAACTGTAAGCCGCATCCGACCCCGATGAAGAGACTTCCAGGGGTCACATGCCCGTGGCACCTCGTGTTTCTGAAGT # Right flank : GATGACCTGCTCCCGCCTGGCTCTTGGCGTATGCTCGCTATCCCGTCATCCACCGGATTTCACCGACTTACGCAGTCTCTTGGACGCCCGAGTGTTGGCCCACCGCGGGTGGGCCACGAGACGAGCATGACCATCAGCACCAGCAGCGTGTTCTCCTTCAAGACGGCGAAGTTCCCTGGGCTCGGGAAGGGCGGCCGCGTGCAGATCCCACAGCATCTGCACAGCCAGCTCGACACGTCCAACCGGATGCGCATCATCCCGTGGGCTGCGGCTGAAGCAGTCGCCCAGGTCCTGCTGGGCCGCGTGGAGGCTGAACGCATCCCCAACCGCCTCACCGTCCAGACCATCGACAAGGACGGGCAGCCCGTCCTCATGGCCTCCCACCCCACTCAGGCGACCTGGGTGAATGCCGGGCAGACCGTACGCCCGTACATCCTCCTGATCGCCGAAGCCCAGCTCGCAGCCAAGCACACCGAACTCGCCGAACGCTGGGGCGCCCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.91, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44480-44935 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVHK01000024.1 Deinococcus xianganensis strain Y35 Scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44480 29 100.0 32 ............................. GGGGCGCGGCCTGCACGGTCGCCGCGTCGGTG 44541 29 100.0 32 ............................. TCGAGGGACTGAGCGACCCGGAAATCCGCGCC 44602 29 100.0 32 ............................. GTGAGCATTGAAGATGTTCAGTTCTGGTCACA 44663 29 100.0 32 ............................. AATGACGCTCTAAATTGGTCTGGGACTGCGGG 44724 29 100.0 32 ............................. GCAGTCGCAACCAGCCTGGACGGCACCGAGAG 44785 29 100.0 32 ............................. TCGAGGGACTGAGCGACCCGGAAATCCGCGCC 44846 29 100.0 32 ............................. GCAGTCGCAACCAGCCTGGACGGCACCGAGAG 44907 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : TACGAACACTGCGACAGACGACCTTGCCGCTGAGACACCCCACTTCGGCACCCGCCTCGGCGACGAGAGTCTCCGCATCGTCCCTATCCACCGCAACGGCGCTGACTTCCTCGATTCGAGAGGTCAGACTGCCGCGCAGATCACCACTCTCCTGAAGAACGACTGGGAGGCCGCCCGCGCTATCTACAGACGCAGCCTTCAAGTGTCTCGCCACGATCTCATCCGGCATTACCGAGATCACCCCACCCGGCGCGGCACCGAACATATCGGCTGGGCTGCCCATCCACTCCTCCGCGATGCCGAACCTCTGATCCTGACCGCAAACCAGACTGTGATTGGTAGGACTCGCGTCACTCTCGACGCCGAACTTGGTCTGACTTATGAACGCATAGAATGACCGTAGGCGTCAGCCTGCGCTGCATGAAAATGTGAGCTAGGTATATGGGCATGGAGGACACCTTCCACCCTCTACTGGCCTCTTGAGATCGTATTTCTGAAGT # Right flank : CACCCCCGACCGGATCCGGCGGGGGTGCTTGCGAGTTCCCCACGCCTGTGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //