Array 1 200621-202175 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBP01000002.1 Cronobacter sakazakii strain SD19 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200621 29 100.0 32 ............................. CACTTATCCACCATTAATCACCTCTTGTTTTT 200682 29 96.6 32 ............................T GACTATTCGAAGTGCGGCGGTCGAGAGATTGG 200743 29 100.0 32 ............................. TATGGGATTCTGGTGCAATCACTGGTTGTCGC 200804 29 100.0 32 ............................. TCTCCGCGACTTCCTGAACATCTTTAATATCT 200865 29 100.0 32 ............................. GGACAGGTCCGCATGAGAACTATTTTCGAACA 200926 29 100.0 32 ............................. CGCCTCGGCTGGAAAATATACGGCCTGTGTAT 200987 29 100.0 32 ............................. GTCGTGCCGCTACCCGCGAATGTGTCGAGAAC 201048 29 100.0 32 ............................. CACCTTCCCTTCGTGATCCATCGGCTGAGGCT 201109 29 100.0 33 ............................. CATTAGCGCCAGCTTTCGCTGGTTTCCGCAGGC 201171 29 100.0 32 ............................. CCGCGGCGGTGTTCCCCGCTGGCCTGGTGATT 201232 29 100.0 32 ............................. GTTATTCAGCAAACGCTGGACAGAGTGATAGA 201293 29 100.0 32 ............................. TAATCTCCCCGGCATTTATCCGCGGCGATAAG 201354 29 100.0 32 ............................. GTAATAATCTTGAGGTAAATAGATTTTGCGAG 201415 29 100.0 32 ............................. GGCGGCGCGTTTCACGACGTTACCGCGTCAAA 201476 29 100.0 32 ............................. GTTCCTCTTTTAACTGCGTGATGAGTGGTGCG 201537 29 100.0 32 ............................. ATTTCGGCACCGGCTTTAATGAATAAGGGCAA 201598 29 100.0 32 ............................. GTCACGCGGCGGGTAATTAAGCCGGAAATCAG 201659 29 100.0 32 ............................. GGAAATAAAATGCTCAAATTTACCAAAAGCCA 201720 29 100.0 32 ............................. GATACGGATCAGTATTCGGCGTTAAGGACAGT 201781 29 100.0 32 ............................. CCGAAAATTAGCCCGCCGAGTGACAGTGAAAT 201842 29 100.0 32 ............................. CTCTTGGTAATGACGCGCAACGCGTTAAGCGC 201903 29 100.0 32 ............................. TAGAGCAATAGCCTCCATCCCACCAATCGCGG 201964 29 96.6 32 .C........................... ATCACCCGATAACTATCGACGGGGATATTTTT 202025 29 96.6 32 .C........................... CGCGAGCTTTTCCGCCCACATCGCGTTAAGTG 202086 29 100.0 32 ............................. CAGGCCGCGCGCCTGGCGCAGATGGAGCGCCA 202147 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGCCAGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228157-228857 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBP01000002.1 Cronobacter sakazakii strain SD19 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228157 29 100.0 32 ............................. AGATGAGCCTTATTATAGAGGCGCGCAAAATA 228218 29 100.0 33 ............................. GTTCGGTACTCCGGGTTGAGAGAGGATGTCGGC 228280 29 100.0 32 ............................. CGGTAGAAACCATCAACCAGTCTGCTTCAGAT 228341 29 100.0 32 ............................. CCAACGAGCTAAATTTGTAGTGTATTGTGCAA 228402 29 96.6 32 ............................T GTCTATGAAGCCCTAAAGTTGCCACAAAAAGA 228463 29 100.0 32 ............................. CAGCGGACGAGGCAAACAACGTAACGCAGAAC 228524 29 100.0 32 ............................. TGGCGGGCGGCGCGGGTTTAATCGGATTGGGG 228585 29 100.0 32 ............................. TGGTGTCGTGAGGTGGATTGACGGATCGTCCA 228646 29 100.0 32 ............................. AAGGCGGGGTGACTGTTTGTGCGTTCGCCGAC 228707 29 100.0 32 ............................. CGTTGAGTATTCTCTTGATGATGGAATCCTCC 228768 29 100.0 32 ............................. CTTTTTTCCAGTCCCATACCGGGTGATATTTC 228829 29 93.1 0 ............G....C........... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCTGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCCGGTGGGTGCGCTTTGCTTATCCGACCTACATAAATTGCCAGGCCCGATGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 465467-465614 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBP01000004.1 Cronobacter sakazakii strain SD19 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 465467 28 100.0 32 ............................ TTCTCCCGCTCTTTGCGCAGCGCCAAAAGCTC 465527 28 96.4 32 A........................... CGAGTGATGTAGATCATTACAGCGCCGGGCTC 465587 28 85.7 0 .....................CGGA... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTTGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAAACGACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //