Array 1 24716-23294 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUW01000101.1 Neisseria meningitidis NM3144 gnm3144.contig.100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24715 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 24649 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 24583 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 24517 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 24451 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 24385 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 24319 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 24253 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 24187 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 24121 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 24055 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 23989 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 23923 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 23857 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 23791 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 23725 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 23659 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 23593 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 23527 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 23461 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 23395 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 23329 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTTTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //