Array 1 518954-519719 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080442.1 [Clostridium] scindens strain Q4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 518954 33 100.0 33 ................................. ACAAGCGTTGATGACGGCGAATACATGGTCATT 519020 33 100.0 36 ................................. GAGCATATCCTGATACATCCAGAGCCGGTCCGAGAA 519089 33 100.0 34 ................................. ATTATGGCTTATGAAGAATGCAAGGAGATTATTT 519156 33 100.0 33 ................................. ATCGTGCCTTGCACTGCACTATCTGATTTTAGG 519222 33 97.0 33 ..............G.................. GAGTTCGGATGTCAGGAAACTGCCACGGCTTAT 519288 33 97.0 33 ..............G.................. ATAACCTCGGTCGTTTTTTCGCAGTTCAAATGT 519354 33 100.0 33 ................................. ATATATGCATTTTTATAAAAAGGATGCTCTTTC 519420 33 100.0 34 ................................. TAAGGGTTTGACTTCTTCTGAGGGGCTTCCTTCT 519487 33 100.0 34 ................................. ATTCTTTTCCAAATATTCCCTTGCGAAGATGATC 519554 33 93.9 34 ...........T..G.................. GGCCTCCGCCTGCGGTTCTTCTCATATATCTTTC 519621 33 97.0 33 ..............G.................. GAAGTCTATCTCAAGCCTTCCATTTGTGATTTC 519687 33 78.8 0 .....T.C....AG..G.A...A.......... | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 97.0 34 GTCTCCCTCTGCGAAGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAAAAATGATTGTGCGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGGAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGGGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TAGGGGATGCTCAAGATAAATAACAATATTGCCAAGTTGCCTTTTATGAGGAAGGAGAGAGAAAACGAAATATTATAGTTTTGAACGTTTATGGAAATATTCGATATTTGTATTTGAGAAGTATGTAAGATTATGTCTTACTTTTTGGTAAAAAAGAAGCGCCAGTGCGGAAGCTGGAGGGTGTGATCTATGAAGGGGAGTTGAAAATTTAATAATAATTAAGTAGAAAGACCAACTGACAATAAAGTTATAATCATCAAACGGGATAGCAGTTCTACATGATGAGAATTAGGTATTAATTATATTTAGTGTCCGACAATATGTTGGATATTTTGTTTTAATTGCCAAAAATGTGTGATAAAATAAAGAAAATGATAATAATTGACAAATAACAGGAAGTAAGTAAATATGAACGATCCATACATTGCACATTTTTATAAAGGCAGTAATAATGCTATACAGATACAATCCGTTTCCGAGCACAATCTTAATGTGGCTTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAAGAGGGAGTGGATTGAAAT # Alternate repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 528298-529002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080442.1 [Clostridium] scindens strain Q4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 528298 33 100.0 34 ................................. AAGAATAACGGTTCTCTCGAAGTCCATCCACCTG 528365 33 100.0 34 ................................. AAGAATAACGGTTCTCTCGAAGTCCATCCACCTG 528432 33 100.0 34 ................................. AAGAATAACGGTTCTCTCGAAGTCCATCCACCTG 528499 33 100.0 33 ................................. GTCGAGTCGGACGAGGAAGTATGCATTATTAAT 528565 33 100.0 35 ................................. TCTTACTACCACATTAGACAACATTTCATAGCCAT 528633 33 97.0 35 ...............................T. ATCCTACCGTCACTGGCCTTTAAAGGCTTTTCTTT 528701 33 100.0 34 ................................. GTCAACCTTGATGTATGCCTGCCCATCTGCCCGA 528768 33 100.0 33 ................................. TATGCCTGCACCCGGAGAAAGATGGAATTCTTG 528834 33 97.0 37 ........T........................ TTCATGGAAAATGAAATGACAGACAAGGAAGCAAAGC 528904 33 93.9 34 .........C..............A........ ATAATCTATACTTACTTCTTCTTCACTGTCAGGC 528971 32 81.8 0 .....A.....T.A........C.A...-.... | ========== ====== ====== ====== ================================= ===================================== ================== 11 33 97.2 34 GTCTCTCCCTGCAGAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTTTTGTGGAAGTAGGTGATAGAATGCTGGTGTTGATAACTTATGATGTAAATACAGAGACAGAGGCAGGAAAGAGACGCCTAAGAAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTATTCGAGTGCAATCTGGACGCCGCAAAACTTCGTCAGGTAAAGGCTATCCTGGAGGATATAATTGATAAAGAAGTTGATAGTTTAAGGTTCTATAATCTGGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTTTAGTGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGAGTTAGGAAAGTTGTAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTGATTTGGCGTTTTGCATAAGGAGTTGATGGGATATTAGAAGTTTTATGTGCAAAATTGCT # Right flank : TAGTCGCAGATGCTAATGACTATGCCAGCACCAAAGCATTTTTCTATGTAGTGTATAAGTAAAATGAGTTATTCAAAACATACATTATGTAATGAGATGTTCCTTTCGTTCAGAAGAAATAGCGAAATATTTTCAAAGTGCGATAAAAAGGTATAGAACATAACTTTTCTTAAAGAAAAATAACAGCAGGCAAAACTCCGAATAATAAAAGTTAACTGATAGCTAAGGTTATGTCTTATAACAAAATGAGCATCACATACATTCCATCAGAAGCAAATGCTGCTATACTATAAAAGTAGTGGAAGATAATAACGTGTAATATACAGAAAACTGCATAAATAACATTTCAAAATTTCTATATTGACCGTTCGAAGATGGACGGTCATTTCTATATTTAAGTAAACAATATTCTAAAATGATAAATTCATAATAAAAGTCCTGGCAGACCTACTTGGTGGTAATTATTTCATATTCATTTGACAACTTGATTTATAGATAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGCAGAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 2915710-2915075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080442.1 [Clostridium] scindens strain Q4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2915709 33 100.0 36 ................................. ACCATCTCCCTGTCTGATTAAATAGCAACCGGATTC 2915640 33 100.0 33 ................................. ATCTGCAAGTTGTTTTTGAGTAAAACCGTTAAC 2915574 33 100.0 34 ................................. TTCCTGTACCGGCCCAGAATTGATATAGCCTTCC 2915507 33 100.0 34 ................................. GTCAGAAAGAGTGTTTTTCCTATGCTTGACACAG 2915440 33 100.0 33 ................................. ATCCTGTAATTCTACTGGTACGACTGTTGTAAT 2915374 33 100.0 33 ................................. GTCTTTCTCGTCCATAACATCACAATAGTATTC 2915308 33 84.8 34 .........AA.GC........A.......... TGACAGGACGAGGCATTGGTACCAGTGCAGGGTC 2915241 33 93.9 35 ...........C..T.................. ATTCCTACACCCGTTTTCGTTTCAACAACGTCTGC 2915173 32 81.8 35 .........CT.GC-.......A.......... CATGTGTCCAGGGCATTGATGAGATTCTGTACTAC 2915106 32 84.8 0 .........CA.G.-.........A........ | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 94.5 34 GTCGTTCCCTGTATAGGGAACGTGGATTGAAAT # Left flank : AACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGATATTTTGACGCAGGGGCAGTACGCCTCTGCGTCTTTTCGATATTGAGGAAAATATATTTTAATAAAGTTCAACAAGGATAGCAGTCAGCAACGTAATGCACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGATATTAGAAAGGCTTATCAACGTCTTGGAAAAATAAAAAGTAGTAGAGAAGATTGAAAGTTAGACAGCAATTTGGTAGTGCGAATATGGAGTATACATAAAAATCCCAGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACGAAAATAATGTTGTTTAATATTGATATTTGGATATGTTTGCT # Right flank : TAAAGCATAGCCAGCAATGCTACAAAGTCAAATGCGTCGATCCCCACATGGGAACGCAAATTGGATTATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTGAGAATCAGAATATAGATACCTCTTAATGGGCATAATAGTTTGATTGTTTACCACAACAAAAAGCAAGGCCTATTTTAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAAGTGATTTTACGCAGAAATGCGAAAAGATTTATCAGTTTTGCATATATAGAGCAAATGCCCATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGGAGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGTATAGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //