Array 1 1201612-1199793 **** Predicted by CRISPRDetect 2.4 *** >NC_017477.1 Lactobacillus johnsonii DPC 6026, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1201611 36 100.0 30 .................................... CCTAAAACAGTACCTTTGTCATCATAGAAA 1201545 36 100.0 30 .................................... GTTATCCTTTTAAAAATGGCATACCTGCTG 1201479 36 100.0 30 .................................... CATGTACTGAAAACATGTTTCCGATAGTAC 1201413 36 100.0 30 .................................... TTAATCAGACGTTATTAACAACTAATGTTC 1201347 36 100.0 30 .................................... CAGCATTTCAGAAGATTAAGCAGCAATTCT 1201281 36 100.0 30 .................................... TTCAAAGACTGATTGCCGTTCTTCATTCTC 1201215 36 100.0 30 .................................... TATCAATATTCTAGTGACTGCATGGGAAGC 1201149 36 100.0 30 .................................... CGTTGCTATCAGTATCTCTGGTATCATCAA 1201083 36 100.0 30 .................................... CATGTACCGTAAACATATTCCCAATAGTGC 1201017 36 100.0 30 .................................... CGTGGCTCTACAATATAAGCTCTTATCATT 1200951 36 100.0 30 .................................... CTTCACGATATTGTTTATTAAATTGAGAAA 1200885 36 100.0 30 .................................... ACCTCTTTAGGTACAATCACACCAGCCTCA 1200819 36 100.0 30 .................................... CAAATTAGTCAAAAGTGTATTTAACGCTCC 1200753 36 100.0 30 .................................... TCTCGTTGTTCTTTCAGAACTTGTTGTTCC 1200687 36 100.0 30 .................................... CTAAGGAGGCAATCACAGCCCAGCTGATTA 1200621 36 100.0 30 .................................... CCTGCTGTGATTTTGATTCAGATGGTTTTG 1200555 36 100.0 30 .................................... AAGAAATACGTGAATTATTAAAAGATAGGA 1200489 36 100.0 30 .................................... AATACAACTTGGATGAATGCTAAGCAAGCA 1200423 36 100.0 30 .................................... TGACAATATATCCTCGTTCTTCAAGAAGAT 1200357 36 100.0 30 .................................... TGATATAGGAGCTAAAGATACAGAAAGAAA 1200291 36 97.2 30 ................................A... TGATATAGGAGCTAAAGATACAGAAAGAAA 1200225 36 100.0 30 .................................... AAAGGCTAGTGAGTTACTAGCCTTTAAATA 1200159 36 100.0 30 .................................... TTAATGTTGTTTAATTCGAGACGTAATTTA 1200093 36 100.0 30 .................................... TAAGCAAACATACAGAGATTGATACGTTTA 1200027 36 100.0 30 .................................... GATACAATTAAAAACCTGTACGGTATTGAT 1199961 36 100.0 30 .................................... CTATGGATGATGTTGAAGATAAAGCAAAAG 1199895 36 91.7 30 .............A......G.....A......... AAAAATATAATTATACAAGAGGATTATAAC 1199829 36 80.6 0 .........................T...ACTCT.T | A [1199799] ========== ====== ====== ====== ==================================== ============================== ================== 28 36 98.9 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATGCTTCTGATTGTAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCATTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTTTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATATTCTGGTTTATCCGAAAGATGCTGATTATTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTGTCG # Right flank : ATAAAGGTCATTAGTATTAATTAAAAATATTGATATTAATGACTTTTTGCTTTGTTGAATTTGGGGATCTTATCTAAATTACCATTTTCTTTTACCTTTAAGAAATTAAAATATTCTTCAGAGAACTTAACGTCTGTTAACCAGACTATGTTTTCGTTTCTTTTGGTTTTATTTTTGGTCAAAAGACACACCTTCAATAATTTAACTATTATTAATTAAAATCTCTGGTTTTAAAAGGACAATAGAACAGAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTGTTTATTAAATTTAAGAACAGTTATGAAGAAAATGGAATTGTTAATGTTCCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGTGGGGGAATTAAATGAGGATGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //