Array 1 5437-6989 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWS01000072.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4762 NODE_72_length_14282_cov_66.701657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5437 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5498 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5559 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5620 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5681 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5742 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5803 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5864 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5925 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5986 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 6047 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 6108 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 6169 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6230 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6291 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6352 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6413 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6474 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6535 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6596 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6657 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6718 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6779 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6840 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6901 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6962 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8933-9450 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWS01000020.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4762 NODE_20_length_67419_cov_64.468302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8933 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8994 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 9055 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 9116 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 9177 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 9238 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 9299 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 9360 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9421 29 93.1 0 ............TC............... | A [9448] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //