Array 1 4729-853 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLA01000023.1 Micrococcus flavus strain CGMCC 1.5361 sequence23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4728 29 100.0 32 ............................. CATGAGCACCGAGAACGTGGAAGTCCCCAAGC 4667 29 96.6 32 ............................C AACGGCGGGGCGCCGGTGGCGATGCTCGGCTC 4606 29 100.0 32 ............................. GGCCTGTGACCATGAGCGTGGACGAGCTGACC 4545 29 96.6 32 ............................C GCGCGGCGGGCGAGCCCGCTGCTGTCGGTGAG 4484 29 96.6 32 ............................C CAGAACACGTTCATCGGCGGGCGCTGGCACCT 4423 29 96.6 32 ............................C ACCCGCCAGTCGTGGCCGTTCGACCGGACGGA 4362 29 100.0 32 ............................. GTGGAGGGACACGGTCACGTCCGCCTTGATAT 4301 29 96.6 32 ............................C CACGATGACCACCCAGACCCGCCCCCAGACGA 4240 29 96.6 32 .........................A... TGCTGCTGATCAACACCCCGCCCGGTGACCCG 4179 29 100.0 33 ............................. ACCTCGCCCTGCTTGGTGATGCGGTAGTGCCCG 4117 29 93.1 32 ........T...................C GTCCCCCGCGGCCGCGGCCCGGCTGCCCGCGA 4056 29 100.0 32 ............................. TACCGGACGACCGGGACGGTGACCCTGCGGGG 3995 29 96.6 32 ............................C TCCGTGGCCGCACGACTGGGAGAGGTGGGGGC 3934 29 100.0 32 ............................. CCGTCACCTTCCAGGCCGGCCTGCCGCTAGGC 3873 29 96.6 32 ............................C AGATAGGAGCCCTGAGATGGCCAAGGCTGACG 3812 29 96.6 32 ............................C AGAAGTTCCACTACGGCCTGGACATGGCCGAC 3751 29 96.6 32 ............................T GCCGTGTCGTAGAGGGTGAAAAGCTCACTGTC 3690 29 100.0 32 ............................. CGGCCCCGCTCCGAGGTCGCCATGCAGACCGC 3629 29 100.0 32 ............................. GGCTTGCCGGATCCCTCCCACCTGCAGCCGAT 3568 29 96.6 32 ............................C TCACGAACGTAGGGGACGACGAGGGTGCAGGC 3507 29 96.6 32 ............................T ACCGCCGGGCGTCCCGGCTGGAGATGTTCCGA 3446 29 100.0 32 ............................. GTGCGGGTCTGCTCGCGGCCGGACCCGTCCGT 3385 29 96.6 32 ............................C ACCACCGCCCGCGACCGCGCCAGAGCCCTAGT 3324 29 96.6 32 ............................C CACGGGGTCACCGTCCTCAACGCCCCCGGGAC 3263 29 96.6 32 ............................A CACTCAAGGGACCGGGTAGTACCGGCAGCTGG 3202 29 96.6 32 ............................T CGGGGCTCGCCGTTGGCGTGCTCCCCGCCGCG 3141 29 100.0 32 ............................. GTGCGGACCGTGTAGGCGTTGAAGCCGGGGTC 3080 29 96.6 32 ............................C GGCTCCACGTTCATGGACAAGAAGACCGGGAC 3019 29 96.6 32 ............................T TGCAGCGCGACCACGCGGGCGGTCACCCGGGC 2958 29 96.6 35 ............................C CCCCCCCACACGAGGTTCGTGCAGGGGACGGACAG 2894 29 100.0 32 ............................. GCGGGCGAGAACCTGGCCCGCCTCATGGGGAG 2833 29 100.0 32 ............................. CCGCCCGTCACCGCGGACACGATGCCCGCCCA 2772 29 100.0 32 ............................. GCCGCAGCAGCAGCCGAGGCCGCCGACGCCGA 2711 29 100.0 32 ............................. TCGCTGGGGCCTGCCCGCCCGGCCTCGCGGAC 2650 29 100.0 32 ............................. TGGGGGTGCGCGGCGAGGTCGAAGTCGTCGGG 2589 29 100.0 32 ............................. CCGGTGCCGCCACGGGACAACTCGAAGCCAGT 2528 29 96.6 32 ............................C AGCGGCGAACACCACGGGCCGTTCCCCACCTT 2467 29 96.6 32 ............................C CGGGGGAGACGTGCGTGAAATAGCCACGTTGC 2406 29 96.6 32 ............................A CGCGCGCGCATAGTGTCAAGTGGTTCACGAAC 2345 29 100.0 32 ............................. CTGGGCCGGCCACATTCCATCGAGCACGACCA 2284 29 96.6 32 ............................C GCGGTGCACACGCCGCGGATCAGACGGGCCGG 2223 29 100.0 32 ............................. AGTGCCGCCCATGCAGACCAAGCCCCTGTCCT 2162 29 93.1 32 ..........A.................C GGGTCGATCACGGCCACCGTGACGGTGCGTGG 2101 29 96.6 32 ............................C GATCAGCCACCAACCGAAGACCTTGGCGGCAA 2040 29 96.6 32 ............................C TGCCGGCTCAGCGCGAGGCCATGAAGCGCGCA 1979 29 96.6 32 ............................C GAGGTGCGGCCGACGGCCGCCGAGATCGTCCG 1918 29 96.6 32 ............................C AACCCCGGCCCCGGTGACGTCCTGATTCAGCG 1857 29 93.1 32 ...................A........C TGCAGCGCGTTGTCCAGCCGCAGGTGCAGGCG 1796 29 100.0 32 ............................. TTCCGGCGCCGGTCTGCATGGCCTGGATCATC 1735 29 100.0 32 ............................. ACGCGTGCGTGACGTTCGGCCCACGCAGGGCC 1674 29 96.6 32 ............................C GGCGGCATCGGGTAGCCCTGCGTCAGGCTGTC 1613 29 93.1 32 .........A..................C GATCCGATGGTGACGCCCACGGCAGCCGCGCC 1552 29 100.0 32 ............................. CGGTACGTCGCCACCACGGACGTGAACCGTCG 1491 29 96.6 32 ............................C CGGTGGGCCCCCGGCATGGCCGCCGATGCGGT 1430 29 100.0 32 ............................. GCACCGGACCCGTCGCAGCCGCTGCAGTACGC 1369 29 100.0 32 ............................. GCCGCGAAGTTATGCGACGCCATGCCCGGGGT 1308 29 96.6 32 ............................C GACGCGCCGACCCGCCGCGAGCAGGCGGCCGC 1247 29 96.6 32 ............................C AGGGTGGGGGACAGGGCCCCCTGCGCGGTCGC 1186 29 100.0 32 ............................. TCAGCGGGTGCATGAGGTGATCCTCTCGAGGT 1125 29 96.6 32 ............................C CGCGACATGCTCGCGCTCGTCTACATGGCGAA 1064 29 100.0 32 ............................. GGGTACGTGGACACGGCGGTGGGCGGCCGCGC 1003 29 96.6 32 ............................T ACGTGGTGCCGGCCGCCGCCGGAGCGGCGCCC 942 29 93.1 32 ..A.........................C ACGGTGTGCGAGGACTCGTCGCCGTCCACGAG 881 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 64 29 97.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CCGGCCCCGCGTCCA # Right flank : CGCACCCAGCGCGGCCATAGAGGGACTGGTGCACGTGTAGGTGACAGCCATCTTCACGCCGCGTCTGCGGGCGTGTGGTCCATGATCAACTCGTACTCAACCGGCGTCAATCGGTCCAGGCGCACCTGCCGGCGGCGGCGGTGGTAGGTCCGCTCGATCCAGGTGATGATCCCGGCCCGCAGCTCGTCCCGGGTGTCCCAGTCGCATCGGTCCAGCACGTTCTTCTGCAGCAACGCGAAGAAGGACTCCATGGCCGCATTGTCCCCGGCTGAGCCGACCTGACCCATGGACCCGATCAGCCCGTGGGTGGTGAGGGCGTCCTGGAAGGCGGTCGAGCGGAACTGCGAGCCGCGGTCCGAGTGCACGATGCACCCGGCCACCGCATCGGTGCCTCCGCGGCGTGCCACGGCCTGCTCGAGGGCGTTCACGGCCAACGAGGCCTGCATCCGCCCGGCCATGGAGTACCCCACGATCCTGCCGGCGTAGAGATCCTTGATCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1093-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLA01000040.1 Micrococcus flavus strain CGMCC 1.5361 sequence40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1092 29 100.0 32 ............................. AGCGGGCATGGAAGAACGCACGTCAGCGGGAC 1031 29 100.0 32 ............................. GCGTACCTCGGCGCGGACGGCGCCTGGCACGT 970 29 96.6 32 ............................C TCGTCGATGACACCGTGGGCGCCGGAGACGAG 909 29 100.0 32 ............................. GAGCTCGTCGACCGGCTCACCACCCACACCCC 848 29 100.0 32 ............................. AACGTGGGCGGGAGTGGGTTCAAGACGCTGGC 787 29 96.6 32 ............................C TTGATGAACTGCCGTCCACCGGCTTCCCAGTC 726 29 96.6 32 ............................C CCCTCCGTGCGAGTGCGCCGTAGGTCATCCTC 665 29 100.0 32 ............................. CGCTGGGCCACGTGCCACTCGGCCGCGTCGAT 604 29 96.6 32 ............................C ATCTCGGTCAACGTGCCGGGCGTGGACTTCTT 543 29 100.0 32 ............................. GCGGTGACGTAGTGCGGCCTCCAGTCGCGGAG 482 29 96.6 32 ............................T ACCGGCCCGGGCAGACCAACGCCCGCGGCACC 421 29 100.0 32 ............................. TGGGCCGTACGTGCCAGCGACGGTGAGATGTA 360 29 96.6 32 ............................C AAGTGGTGGACCGTCCGCGCCGTGAGCGACCG 299 29 100.0 32 ............................. GCCCGGCGCGAGCGGAGCCGAGACAACATCGC 238 29 96.6 32 ............................C ATACACGCCTATGGGGGAGGGGGCAACCCCCG 177 29 100.0 32 ............................. GAACTCCCACATGCGCCACCAGGAGAACCGCC 116 29 100.0 32 ............................. CACGCCCTCACCGGCGCCTTTGATGGCCGCAT 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : | # Right flank : GCCCTGGTGGCTGAGGCCCGCGTGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1826-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLA01000007.1 Micrococcus flavus strain CGMCC 1.5361 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1825 29 96.6 32 ............................G TTCGCCTTGTCGACGCCGGCCGGGTAGTCGAA 1764 29 100.0 32 ............................. ATGTGCACGGTGTTGCCGGCGGACCCGTAGCA 1703 29 100.0 32 ............................. TCGCCAGGCTTGCGGCCGAGGGGGTCGTTGTG 1642 29 100.0 32 ............................. GTCACGGCCACGAGGCGGCCCCACCGGAACAC 1581 29 100.0 32 ............................. TCCTTGACCGCGTCACCGGCCTTATCCATGCC 1520 29 100.0 32 ............................. TCGTGCTCTCCGATCCGGACGATCATGGTCCG 1459 29 96.6 32 ............................G GTGACGGCCTCCAAGGCCCTGTTCGCGGACGC 1398 29 96.6 32 ............................G CTCACACCCTGCCCGGGCCCGTTCGAGGTGAC 1337 29 100.0 32 ............................. CGTCTCGTCCAGGTGTCGCCGCCGTCCATGGA 1276 29 100.0 32 ............................. GTGCAGATCACGAACTTCCGCACGGAGGACGC 1215 29 100.0 32 ............................. CGGAGTAGTCAACCCGCTTGAGGGTCCGCCAG 1154 29 100.0 32 ............................. CCCGGCGGCGTCGGGCACCTGTGGGTCAAGGC 1093 29 96.6 32 ............................G GTGTCCCACGGCTCCATCCGCTCCGCCAAGAC 1032 29 96.6 32 ............................G ATGTCCTTGACGGTCAGGCCCCACCAGGTCTC 971 29 96.6 32 ............................T CCCCGTGCCAACCGATGGGAATGGAGAAACCG 910 29 100.0 32 ............................. AGGATCCAGGGCAAGACCGTGGACCTCACCGC 849 29 96.6 32 ............................G AAGCGAGCGCCGGTGGCGTCCCGGTAGCAGAT 788 29 100.0 32 ............................. CCGTCCTGCTGCAGGACCAGCAGCCGGTCCCC 727 29 96.6 32 ............................G TTGGCGCCGTCGTGGAACTCCACCTGGCACCT 666 29 100.0 32 ............................. CATCCGCCCCCGAAGCACGGCTCCCCGTCAGC 605 29 96.6 32 ....................A........ TGGAATCTGGTGCTCAAGGGCATCATCGAGGG 544 29 100.0 32 ............................. CAGCGCTACACCCACTTCGACCACCCCGCGTT 483 29 100.0 32 ............................. CGATCGCTCGACGCGTCCCGCTGGGCGATGAA 422 29 96.6 32 ............................G GAGGGCATGACCCCGCAGGTCGACGTGTGGGA 361 29 96.6 32 ............................G TTCGAGCCGAGCACCCGGAGACCGTTGTCGTA 300 29 100.0 32 ............................. TACGTGGAGCGGGCCCGGTACCTGCTGGACCG 239 29 96.6 32 ............................G TCCCGGACCATGCCGAGGACTGGCAGGATGAC 178 29 100.0 32 ............................. CTGCCGTGGACGTCCGTGACCGGGAAGCCGTC 117 29 100.0 32 ............................. TGGCAGATCGCCCGGCTCTGAACCGGGAGGTT 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TCCCTGTGGAGCGGGCGAGGCCAGCAGACCGTCCCCGGCGGCGTGAGCTACGGAGAGCGCGCATGATGGTCCTGGTCCTCACGGCGGCGCCTGCCGGCCTGCGCGGAGAGCTGACTCGCTGGCTGATGGAGATCGACGCGGGCGTGTTCGTGGGGAACCCGTCGGCGCGAATCCGTGACGAACTCTGGGCGAAGACGAAGCAGGACGTCAGGGAGGGGCGTGCCCTGCTCGTCTACACGGCAGCGACAGAACAGAGAATGCGCGTCGAGACGCACCGGCATCATTGGCAGCCCGTCGACGTGGAAGGACTGACCCTGATGCGGCGCCCGCTTCCGGAAGGATCCCGGCAGGATGGCCCGCAACGACGTACTGGATGGAGCGCTGCGCGGATGCGGCAACGCTCGTTGAGGCCGTCGTGGCGGCGCCAGCAAGACGGCCAAAGTGAATGAAACGCACGCCGAGGCGTGCGGCTAGGCTTGGAACCGGGCCAATTTTCAAGT # Right flank : CCACCAGCGGGGAAAGTGCTCGACCCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //