Array 1 107873-106209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZD010000001.1 Salmonella enterica strain FUA10098 NODE_1_length_460114_cov_22.154006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107872 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107811 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107750 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107689 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107622 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107561 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107500 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107439 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107378 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107317 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107256 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107195 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107134 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107073 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107012 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106951 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106890 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106829 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106768 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106665 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106604 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106543 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106482 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106421 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106360 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106299 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106238 29 96.6 0 A............................ | A [106211] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125257-124131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZD010000001.1 Salmonella enterica strain FUA10098 NODE_1_length_460114_cov_22.154006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125256 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125195 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125134 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125073 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125012 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124951 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124890 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124829 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124768 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124707 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124646 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124585 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124524 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124463 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124402 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124341 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124280 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124219 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124158 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //