Array 1 3065399-3063843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039610.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014875 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3065398 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3065337 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3065276 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3065215 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3065154 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3065093 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3065032 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3064970 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3064909 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3064848 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3064787 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3064726 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3064665 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3064604 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3064543 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3064482 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3064421 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3064360 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3064299 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3064238 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3064177 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3064116 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3064055 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3063994 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3063933 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3063872 29 96.6 0 A............................ | A [3063845] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3083023-3081530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039610.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014875 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3083022 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3082961 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3082900 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3082839 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3082778 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3082717 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3082656 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3082595 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3082534 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3082473 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3082412 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3082351 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3082290 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3082229 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3082168 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3082107 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3082045 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3081984 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3081923 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3081862 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3081801 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3081740 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3081679 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3081618 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3081557 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //