Array 1 12040-11825 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCQ01000012.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3869 P248contig109.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12039 29 96.6 32 ..T.......................... CCACACACGGGCTGACGCGCATCACCCTGTCC 11978 29 100.0 32 ............................. AGTCCATCACAGCCGTTGCGGGACGCTCTTCG GCG [11959] 11914 29 100.0 32 ............................. TACGCGTCGTCCAGCTTCAGGCGGTTGGCGGT 11853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GGCGGCACCCTCACGCGCGTGGGGAGCGG # Left flank : GTCCGGTGAGGGCTGCAGTTGATCCGTATGGTGCATTTTGTGCGGCTGATGATGTGTGTGCGTTAAGTTTTGGCTCTTCTCTTGACTAGTAAGGGCGAAGGGCGGCTGCAGCTCTTCTGGATGAGCGAGAGAAGAGGGATGACATCCCAGATCCCGGACTATGTGATGGCTGTGGCGGGTGCTGTGACTGCGGCCCGCGCAATCGGGGTGGGTTCACTGTTCCGCCGTGTCACAGGTAAAAGGCCGGCACGCATGGTGCCGGCTTCCCCCTGCCGACAGCAGGTGCCAACTCGCGGTTCAGTGTCCGTAGATCTCTCATTTCGGTGTCCTAGCGGTGGGCTTTCTCATGTGCACAGATGAGGGGGTGTGTGGCGCAGCGAGTGCGAGATACGTGGGACACAAACTGCAAAGCCGCAGGACACTTTCATGCGAGTTGCAATAGCGCGCGAGCGCGTCTTCATGATTGGTGTGCACGGCTCCTCAGGGAGCGCCGATAGCCG # Right flank : AGGTGGTGACCTGCGGTTCTTGGCGGGGCTGGCTCTGATTTTACTCATTTGTGCTGCCGCACACGGGGTGGTTCAGGAGCGAAGAGGTAGAACTGTCGTTTGCTTTCGTTCGGAGGTTCCTGCCAGTTGTTCGGCCTCTTCGGTGGACGGTGGATGCTGGATCTCGCGCTTACTCCAAGGCCCTTGAGCGGAAGGCAGAGCCGGGGCGGCGTCGCCGATTCCAAGACGCCAGGTCGCGACTGGTCCGTCGAAACGTCGGTTCAGTCGTCACAGCCCGGCCCCGTGGCTGTGCGAACTGCCTGAAACGCCGGCCGCGCTATGGGCCCGGCCTGTGCAGGGCGGTGGGCTGATGCCGGCTCAAGGCCGGTCATAGGCGTCTGCGGGCTGTGCCGCCGTCGACCGTTGGGCGAGGCGGTATACCACGCGGTGCGGGGCCGGTTCACGAGGCGGCGTCGATGCCGTAGTCGGTGGCCAGGCCGGCCAGTCCGGTGTCGTAGCCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCACCCTCACGCGCGTGGGGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 376-1689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCQ01000222.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3869 P248contig30.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 376 29 100.0 32 ............................. TCGATCAGAGACAGGCGCATGGCCAGGCGCAG 437 29 93.1 32 ..........TA................. ACGATCGCCCACGCGCCGCCCTCCAGCATCGA 498 29 93.1 32 ...T.......A................. GACTGGCTGCGCCGTAAGGCCGTCAAGAAGGC 559 29 79.3 32 .AATA.T...................T.. ACCATCACGGGCGGCACGATCACCGGCACCGA 620 29 89.7 32 ..A..........A.T............. TAGACGACCCGGCCGCCGAACATCCGGGCTAC 681 29 82.8 22 ....A.................CA.TT.. GACCTCGGTATCGAGAATGACG Deletion [732] 732 29 69.0 41 TTA..GG....C.....C..C.......A TAAAGAACCAGCAAAGCCCTACCAACGCCCCAGCTCACGGA AG [757] 804 29 86.2 32 ..GAAT....................... ATCTCGGCGGCCCCGCCGATTTCGCGCGGATC 865 29 86.2 32 ..GAA.......A................ GTCATCGTCGCGCTCGCCGAGAAACTGGAAGA 926 29 82.8 32 ..GAA.........C..A........... TTGCAGCGCGAACCTGACGGTCTGCCGCAGCA 987 29 75.9 32 .T.........A.C.......GCC..T.. CGCCTGGAGGGGTCCGCCTTGATGCACATCAG 1048 29 82.8 30 ....A...G..A......A.A........ TCGACGTCGCTGGTCATTCCAGTGGCGGAG 1107 29 75.9 84 AAG.C......A.....A..........C TACGCACTGTTCATGGCCGTGGTGGCCCTGCGGTGCGCCCTGCGCGTCCGGGTGGGCCAAGTTGCGGAGTGTGCTCACCGATCC 1220 29 75.9 32 .T.T.G...T..T.......A.......C GCATACGCCTTCTGCGCGCCGAAGCTCAGCCA A [1234] 1282 29 75.9 31 .T....T.T......T.A...T.A..... GTGTTCCGGACGACGACGCAGTCGCCGGGGG 1342 29 72.4 32 C.T.C...T..A..C..A.........T. GCCCCGTTCTTCATGGTTCCGGTCTGGGTACC 1403 29 86.2 55 CT......T..A................. GCGAGCGGGCTGATGTCGCGCTGTGACTCGCTGCCCCCCGCGCGACCGGGGACGC 1487 29 89.7 32 ....AT.......C............... GCGGCACAGGAACTCGCCGCGGCAGCCGTCAA 1548 29 86.2 84 ....A......A...T......A...... AAGAGCAAGCGGCTCCGTGCCGAGCCCATCGCGGCGAGTCCGGGAGGGAGCCAGCCCGAGGGCTGATGGACCGGCGCGACACCT 1661 28 72.4 0 .......A...A.-AT.CA...A...... | T [1663] ========== ====== ====== ====== ============================= ==================================================================================== ================== 20 29 82.8 39 GGCCGCCCCGCGCGTCCGGGGATGAACCG # Left flank : ACCCGGCCCTCCCCGCCCTCGCAACCGCAACGCCCCCGCCGACACCAGCCCCGACGCCGTCCTCACCTGGTTCACCTCACGCCTCCAGCCCCCCGGCCACCCCGACTACGACCGCTGGCCCCGCATCGGCGCCACCGCCGACCCCACCGAACTCACCGCCCGCCCACTGCCCGGCCTGGCCAGCCACACCGCCCACCCCGGCATGAAAATCAACCGCGCCGAAATCACCGGCCACCTCACCATCACCGATCCCCACACCTACGCCAAAACCCTCACCCACGGCATCGGCCGCTCCCGCGCCTACGGCTGCGGCCTCCTCCTCACCCAACCCGTAAACAACCAGCAAAGCCCTGCCAACATCCCAGCTCACGAAGGG # Right flank : GAAGATGAGGCAGCTTCCCGGTCGAGGAGGAGGACTGTTCCCCACTCTGCCGCCGCGGCGAGGTGTCGCTTCCTCGCCCATTGGTTCACCGTGAAGACCCGGTGGCGCTTGAGCTCCGACACCACCGACCACGCCCCCACCAAGAAGATCGCCACCGGCTGCGCCGATCCTCGCAACACCGTGGTCCACGCCCGCTGCTCCCGAGTCCGTACGGCACAGCGGCAGCCCCACTGTCCGACCCGGCACCGTGTCCCGGACCGGCGCCTGTTCCGGTGCGCCGGCTCTGCGTCATCCGCCTCCCCCCCGCCCAGTCATCCGGGCTCTGGCACGTGCGGAGCCGTCAACGCAGAGCGGTCTTGAAACCTTTGATGATCCAGCGGGGAGGAGACGTCACAGGCATGTTGCAGACGATGAGGTACGGCAGACCGGCCACGATCGATCCGGGCTCGAGTGGCGACCGACCACCGGGTAAGGAGCGACACACGTTGGACGGCAATAGA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:-0.30, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCCCCGCGCGTCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //