Array 1 42417-46436 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRFX01000016.1 Clostridium perfringens strain 83921_3_4 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 42417 29 100.0 36 ............................. TAGGAGTTTTTGTATAATTTCTTATATGGGAAGTTG 42482 29 100.0 37 ............................. ATTTCCACATCATTAATGGTGGAAGGTAAGGGATTCG 42548 29 100.0 36 ............................. TTAATAATAAAAAACGTAAAAAAAAAGAGAGTAAAA 42613 29 100.0 37 ............................. TTCTTTGACTTAATAGACTTAGAGTTTTTACTACAAG 42679 29 100.0 37 ............................. AGATGATCTAACTCCAGTTAGAATTCAAGTTTGTCAT 42745 29 100.0 36 ............................. ATCTAAATTCATCTGTTATAAGAATAGTAGAACGTA 42810 29 100.0 36 ............................. TGAATATGTGTATTCATAAGTATTTTCTTTTAATTT 42875 29 100.0 36 ............................. CATGTGTTTTCTTTTTAGACATTACATTCTCACCAT 42940 29 100.0 36 ............................. CATTTTGAAGTTTCATATGTGAATATCTAGTCATCC 43005 29 100.0 36 ............................. CGCTTAGAGGTTGCATAGTCTTAATAATCATTAACC 43070 29 100.0 36 ............................. TTTGCTATGACAAAAATGATGTTATTTCCTAATTTT 43135 29 100.0 37 ............................. ATAATTATTGGTTAAGCTTATTTTGATTTAGCAGAAG 43201 29 100.0 37 ............................. CTAAAAAAAATTAATTGTTTTGTGCTATATATAAAAA 43267 29 100.0 36 ............................. AAGTTTCTATTGCTTTACATACTGAATTATCTTCTG 43332 29 100.0 36 ............................. TCTTTCGGCTTTTCGTTTCCAAAATAAACCGATTTA 43397 29 100.0 36 ............................. AAAACAAACAATTATGCAAAATAAGACCAAAAGCAA 43462 29 100.0 35 ............................. TCAGAATTAGTTTTTGTTAATACATACGACAATGA 43526 29 100.0 36 ............................. TGTTAATCTATTTTCTGATATAGGAAGTTTATTAAG 43591 29 100.0 37 ............................. TCATTCGTTTCATTTGATTCTAGTCCAAAGTTATTGG 43657 29 100.0 36 ............................. AGGAGTTTTGGATTAATCAACAAAGGATAGCAGATG 43722 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 43788 29 100.0 36 ............................. TACTTTAAAGTTTCTTCTCTATAAGGTATCTTTTTC 43853 29 100.0 36 ............................. TTAGGAAAAGGACAAAAAGAAGAATTAGAAAGATAC 43918 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 43984 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 44050 29 100.0 37 ............................. TCAATCAAATTTTTACTTTCACAAACTTTTTCATGAG 44116 29 100.0 37 ............................. GATTATGTGGTTAATAAAATTACTAATATTACAGATC 44182 29 100.0 37 ............................. TGTTGTGATAGATATAAACAATGTGAAGAAATAGAAT 44248 29 100.0 36 ............................. TCTTTACCTTGTTTAACTTCACTTATTATAGTTCCA 44313 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 44379 29 100.0 36 ............................. GTTCAAACTTTTTACCTTCATTAAGCATTACCAACC 44444 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 44509 29 100.0 37 ............................. GTGTTTCCTTGCTATGCAATAGGAGAACACAAAGGAG 44575 29 100.0 36 ............................. AGCTGTATTTTTAGAGTTAAAGACTTTTATATTACT 44640 29 100.0 36 ............................. AGGTAAAGCTCCAACATCAGGAGTACTAACAATATC 44705 29 100.0 37 ............................. TGCAAAAACACATGGTTTATCATAAGTTTTCAAAAGC 44771 29 100.0 37 ............................. CCTTTTATTCTTACTGTATCTTCATAAATTTTGAATT 44837 29 100.0 37 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTATG 44903 29 100.0 36 ............................. AGCATTATTTTAACTTCATCCTCAACTGCAAGTTGA 44968 29 100.0 37 ............................. TTAACAATAGAAGGACTAACAGCACCAACACTACTAA 45034 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 45099 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 45165 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 45231 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 45297 29 100.0 36 ............................. TAAGTAATAATTGAAAAACTACAACTTCATGGAACT 45362 29 100.0 37 ............................. AGCTTAAATTGTTTTTCTATTATTACTCTATGTGCTC 45428 29 96.6 37 ............A................ ATTATTAGTTTTTCTCATTCTTCTTATTTGATTTTCG 45494 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 45559 29 100.0 36 ............................. TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 45624 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 45690 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 45755 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 45820 29 100.0 36 ............................. AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 45885 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 45951 29 100.0 35 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGA 46015 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 46080 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 46145 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 46210 29 100.0 36 ............................. GGATCAGGAAAGAGTTTGCACGTGGCACAAGAAATT 46275 29 100.0 37 ............................. AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 46341 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 46407 29 86.2 0 .................GAA....C.... | T [46434] ========== ====== ====== ====== ============================= ===================================== ================== 62 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGTATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTTAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //