Array 1 51188-52984 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCS01000009.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2690 NODE_9_length_159196_cov_0.973822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51188 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 51249 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 51310 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 51371 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 51432 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 51493 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 51554 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 51615 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 51676 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 51737 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 51798 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 51859 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 51920 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 51981 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 52042 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 52103 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 52164 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 52225 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 52286 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 52347 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 52408 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 52469 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 52530 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 52591 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 52652 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 52713 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 52774 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 52835 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 52896 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 52957 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69666-71344 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCS01000009.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2690 NODE_9_length_159196_cov_0.973822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69666 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 69727 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 69788 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 69849 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 69910 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 69971 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 70032 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 70093 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 70154 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 70215 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 70276 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 70337 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 70398 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 70459 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 70520 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 70581 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 70642 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 70703 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 70765 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 70827 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 70888 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70949 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 71010 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 71071 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 71132 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 71193 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 71254 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 71315 29 100.0 0 ............................. | A [71342] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //