Array 1 5172-7053 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAN01000009.1 Neobacillus vireti LMG 21834 contig09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5172 32 100.0 33 ................................ TTCTGCTGTTGGTAATGTGTGGGATTCTATTAA 5237 32 100.0 33 ................................ TTAGAAGGTAATCGTGGAGGCGGTAGGCGGAAA 5302 32 100.0 34 ................................ CCCGAAAGAAGCGCAATTGGCTGCCTCTGAGGAA 5368 32 100.0 35 ................................ CTGCGCCATCTGCGATTCCACTGCCAGTCCGTCCA 5435 32 100.0 34 ................................ AAGCAGCTGTATTGGCCCGTGTGCTAGGAATTAC 5501 32 100.0 34 ................................ CTAAGCTAGCCCAAGTATCCATACGATAAAGGAC 5567 32 100.0 35 ................................ AACAATGTTTATGGCATCTCAGGCTGCAGAAGGTC 5634 32 100.0 35 ................................ AATAGAAGGTGGAACTGTAAGAAATGTTTCGTCAG 5701 32 100.0 35 ................................ ATGGAACTTACTTCAAAATAGCAGTTAGCGAATTA 5768 32 100.0 35 ................................ GCAATGATGCGTGAATCGGCTCATCGTGCTAAACG 5835 32 100.0 35 ................................ CTCACCACGATATTCAATACCCATCTAAAACCGCC 5902 32 100.0 34 ................................ TTCCATTCACCGTTGATGATGTGGATGAAAAACT 5968 32 100.0 33 ................................ TTTCGCTGTGCCGATAAATAAAAACTCATCGCC 6033 32 100.0 36 ................................ AGGTGGCGCTCTTAGGTCACACCTTAAACAGCGACG 6101 32 100.0 33 ................................ ACGATCGTTAAATACTTGATTTTGATAGTAGGA 6166 32 100.0 33 ................................ TATTACACCAACTTTATTACCGGTATAATCGAT 6231 32 100.0 35 ................................ CCTCCGGCATCGCAATATCTACACCGCTATGTGGC 6298 32 100.0 33 ................................ AAAAGTAAAGTAAACTTGTCCGTTCTCATTAAT 6363 32 100.0 33 ................................ ACGTGAGGTAAAGACTGCGAAAAGTGGATTAGT 6428 32 100.0 32 ................................ CATTCGTTTTAACCCCAGGACCGCACGGCTAC 6492 32 100.0 35 ................................ ATTAAGACTAATACCAACGGCAGCCGCAAGGTCTT 6559 32 100.0 35 ................................ CGGTACTTGGCTTTATCGCTGCTGGACAGCCCATC 6626 32 100.0 34 ................................ ACGGAACATGGTGTCCATTCGAGTAGCTGAATTC 6692 32 100.0 34 ................................ ATTAAGACTAATACCAACGGCAGCCGCAAGGTCT 6758 32 100.0 33 ................................ GCAAGATCTTTTCGAAGCAGCCAACCGTGCTCA 6823 32 100.0 34 ................................ TATTATTGGCTTTCAAAGGATCTCGGTCACATCA 6889 32 100.0 34 ................................ CATTATTGGCTCGAAGCCGCTTGCCGTGCCGCCG 6955 32 93.8 35 ...........................T.G.. TTTTGGGATAGGGATATCTTCATCCATGAAAACGT 7022 32 93.8 0 .........T..........A........... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.6 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TTGACATTTTTGTGAGATAATCCGATTATAGTACTATAATGTTATTTTGAATGTTTTGACAATTCAACAGTTGAATTACTTTTGAAGATTAAGAAAAAGATCCCTACTCAAATACAACAAGAAAAGCGGAAGAATAACCAAAAAAGGGTGACTTCTGCTTATTTTTATGTTTAAAAAAGCTAAGGAAATTGATATCCCAAGTTCGGGGAAAGATTTTTTTGATGAAAATGAAGATAGTCTTAGATTTTATCAACAATATAGTATTTGTAAGAACTAGGTAGAACTTATTAGTATGCAAGAATCTATCCATATAGATAGCCTTTTATTTTTTGGTGCGAGTGTGTAGTGTACATATTTTTTCTGGGAGTTTCGCACCTGAATTTCAATGTTTTATTAATGGAATTTGTTATAATTTGTATATAGTTCTTTTTTAATAAAGAAAATAGTGTGTTTTTGATCAAAAATTACCTACTTTTAAGTAATTTTGGTTAAAAATCGCT # Right flank : TCGAATGCGATTTATGAGATGAAGGTCCAAGTTATAAAGAAAGTGAAAACTTTTTGAAGGTAATGGGGAAAACATCACAAGGGCCGGCAATAACCCTATCAAAAAATATGTTAAATGGAATCAATGATAAAGTAGATGTAGTTGTTGAAATGTTAGAGTTCCTAAATGGCGACTGAATAGGGCTTTATGAAGTGGGTGAGAATCCAGGGAATACGGCTTCTATTTGATGGATGTATACGAATGTCACCGACGGAACATGTTAATTTACCTTTGATCCAAAAAATAACCTCAATCCGGCAAGATACAAAGAAGGCGGAGCGTATAAATTAGTTTATTTCTATGGCAGCGGGTATGACGCTGTTGCTGAAACGATGTTTATGGTCGGGAGTATTTAGGATCAATGGCTTTATTAGCAGTAAGTTTTCTAGTTGTTGGGGGAACTTACAGGTGATTTATTTTTAGCGTATACTATATTACTTTTTAAAACGTAAATAGTATAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15904-17519 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAN01000009.1 Neobacillus vireti LMG 21834 contig09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15904 32 100.0 34 ................................ CCCAATGTTGAATGACAAAAACACGACATTTTCT 15970 32 100.0 33 ................................ TTGTGTGAAAAAGGAAGAACAGCCAGGAGGCGG 16035 32 100.0 35 ................................ TGGAAAGTTGCCCTTGCCCTTCGGGGTGAGGGTTT 16102 32 100.0 33 ................................ TATTAGGTTTAATTTTAATGGTCCTCGTTATTG 16167 32 100.0 34 ................................ TTAAAATATAATCAAGAAATCATTGATAAGGCTC 16233 32 100.0 34 ................................ TCTATAATGGGCAACTAAACAATAATATCTTTAT 16299 32 100.0 34 ................................ AGCCAGCGCAGGCATATTGTTTTTGCTTGATAGA 16365 32 100.0 34 ................................ AATCACAAAAATCACCATCTTTCATTATCCACTC 16431 32 100.0 35 ................................ ATAATGACTCGGCTTTGATTGTCGAGAAATTGGAC 16498 32 100.0 34 ................................ AAGGTGTTGGCGAAGCGGCGGTCAAATAGATGTA 16564 32 100.0 34 ................................ CGTGTCCACAGTGAATACCTTCCGACCAGGTACG 16630 32 100.0 34 ................................ AGCGCTTCGTCCCAGTGATACATGATCGGCTGCG 16696 32 100.0 35 ................................ GTTGATTGTCATTTTCGGATGTCCCCCTAATTGGT 16763 32 100.0 34 ................................ CGAAGAAACATTAACAGAAATTCCGGATGGCGCA 16829 32 100.0 34 ................................ TAAAATCCTAACCGTCGCATCAATGCCCAGTGCC 16895 32 100.0 33 ................................ GCCAATGTATACCACTAGTTATTACCCTAATAG 16960 32 100.0 34 ................................ AAACACAGTTAAGACAATATCGGATATTATCCCG 17026 32 100.0 35 ................................ ACTATTCTGCACCCTACCCTACTAATAGAATGGTC 17093 32 100.0 34 ................................ TCTGCGGCGAGTGATCCAGTCTCGAAAGGGCCTT 17159 32 100.0 34 ................................ ATCGTAAGGCTAATTCTGTTTTTCCGTTCAGCTT 17225 32 100.0 33 ................................ CGTTATTTTTTCAATTTCGATAGCGAAAATATC 17290 32 100.0 33 ................................ CAGCACAACAATACGAACCCAAAACCAATGCCC A [17302] 17356 32 100.0 34 ................................ GCCAAAAGAGCCAGCATTAAAAGTTCGGAATTTT 17422 32 93.8 34 ...........A........A........... ATTTCGAGATTTATTCGAAAAATTGAATTTAAAC 17488 32 93.8 0 ...................G......C..... | ========== ====== ====== ====== ================================ =================================== ================== 25 32 99.5 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCGCCATTTTTGTGGAAGTAGGTGTAATATTTGTTAGTGTTAGTTACGTATGACGTAAGTACAGTTAGTAGTGGTGGAAAAACAAGACTTCGGAAGGTTTCAAAGACCTGTCAAAATTATGGCATTCGTGTCCAAAATTCAGTATTTGAATGTAATGTAGATGCCACTCAATTTACAGCTTTAAAATTGAAGCTTGCTGATATTATTGATGAAAATGAAGATAGTCTTAGGTTTTATCAGCTAGGTAATAATTATAAAACCAAGGTAGATCATATTGGGGTTAAAGAATCAATCGATTTAGATAGCCCTCTAATTTTTTAGTGCGAGTGTATAGTGCACATGTTTTTCCTGGGAGATTCGCACCTGATTTTCTGTGATTAATCACTAATATTTAGCATAATTATATTGTGCTCTTTATTTATTTAAAGAAAATAGTGTGTTTTAGGGCAAAAGTTACCTATTTTTAGGTTGTTTTGGTCAAAATCCGCT # Right flank : TTAATGTGAATCTAATTACTAAAACCAAGTGTATTGTCTTGAAATATGGTATGTGTTTAATCGTTTGTACCTCAAAGCAAAGCCGACTTAGGCTGAAAACCGGGCGGCTCCGTTCGTGATGCCAGGCACCAGTTTCCTATTTTGCATTGATTTTTTTCTGCGCTTCCTTAGCAAAATCTTTGTACGGCGTAGGAGGAAGCGGATTAAAACTTTCCACCGCGATTGAAGCGATTTGAAGGGCCGTGTCCACGTTTCCCAACTCGAAGTGGCTAAGTGCGATATACGAGTCCTTAACATAAAGTAAGGATAAATCAATGGGATGATGAATATAAGGTGGGATTGAAACATTTTCTAAACAATCAATCGCTTCTTGAAAACGACTAAGACAATACAAAGCTTTTCCCTTTTCAAGACGGAATAAATGGCAGTATATCTCAAGTGTTGTTGGGCTAGCTAAGTACTTGTCACTGATTTCTATTGCATTAACGTATTCCCGCTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //