Array 1 66254-67076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCR01000025.1 Levilactobacillus spicheri strain LP38 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66254 29 96.6 32 ............................T TAAGAAACGGGCGTCGTCGTCCCACTGCATGA 66315 29 100.0 32 ............................. AACGGTGAAGTGGTCAAGTCCACCGTCTGCTT 66376 29 100.0 32 ............................. AGGCCGAAGCGTTGGCCAACTACGTAAAAAAA 66437 29 96.6 32 ............................T ACGACGTGAGGAAAACTCGCGATAATGGAAAA 66498 29 96.6 32 ............................T CATCTCGTTGACCCATCCTGGTGTGCGTCCCA 66559 29 100.0 32 ............................. GAATGGCTCAAGGGGACGAGTGCGGCCTAATG 66620 29 100.0 32 ............................. TGCACCAGGTCGGTCGCAAAGTCGGCGGACTG 66681 29 100.0 32 ............................. GTTCCAATGGGTCGCTGGTTCAACGTTTGCTG 66742 29 96.6 32 ............................T GACTTCCAATACAAGCTGATAGGGAGCTTCAT 66803 29 93.1 32 .......T....................T GACCCGAGGGCCCGCCCTCGGACACCCGGCCA 66864 29 100.0 32 ............................. AACCCCGCTGATGGTCAGGCCCTTGCCGGGAA 66925 29 100.0 32 ............................. TCAATCTTGCCGATGTCACGGTTGGGGTACGT 66986 29 96.6 32 ............................T CACCTTGTGTTCGTCAGAAGCTCCGAAGTTGC 67047 29 96.6 0 ............................A | T [67072] ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : CGGTTAGTCAGGTTGCGAGGACTGGACCAATCGGATGCGAAGTAGTATTTAAGCAGATAAAATTTTAAGTGGCCTTCATAATTAAAGGTAGTGATTCGCAAAGCTCAGGCGGCGCATCACTGCCTTTTTTGTCAGTTGAATATTGACAGTTTACGGGGGGCGGGGGTTGGTGTGCCGCTGTAATGGAGCAATTTAAGCGGTCAATCTAAATGATTGGGAACGCGAATTTGGGCATGACAATAATTTGCAACGAAGCTAATTAACAGGTTAGCCGATTCACGCGGATGCTAAGCGACGAAAGTACGGGGTGGAAGCTTTGCGGAAATGGGAATCAATCTAAAAAAGATATTCTTTGAATGAGTGAGTGAATTCTTCTGGTGAGAGACGTTGAACTTGGTAGCTGATGGGGAGAGGCGTATGATTTGGTTAATGGGAACTAAGTTAATAAAAAACGGGGATTTTTGATTTTGAAAAGGTTGATATAGCGGGATTCGTTTAGT # Right flank : AGGTAATGTGACGTAATCAAATAAATAGCAACTTAGGAAGGCTGGCCTTGAATTAGTGACGTAATTTGATTTACTTGAAATGGTGATAATGCCCAGAGTAACAAGGATTACACCATTATTCAGCTTTTTTACTAACACAATTAAATTGATGACAATCGATTCGGCGTTTGCTAATCTGGTAAAAAAAGAAATAGGAGAAATACCAGATGAAGACGCATTTACTTCGACTCGTAAAGGCAGCATTGGTCATGACGCTGGCTGGGGGAGCCTTACCGGCACAAGCGGCTAGCAAAGATGTAATGCCAGAACCTGGGGCAGTTTCAGCACCGAAAATTCCGACGGCTGATGCTCCTGGACAGTCAATCGTGTACCAGAATTCAAAAAAAATAATGGTTTTAAAAAACTCACGCAGTTTAAGTGGCTATCCGACCGCTGACAATAAGTGGAAAATCCGCTCAGGGGCGCTAATTCGCTCGATGGCACTGAGGGACCTAACGGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165330-165666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCR01000003.1 Levilactobacillus spicheri strain LP38 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165330 29 96.6 32 ............................T TCTTACCGTGACGCTTGGAGTAATTGATCAAA 165391 29 100.0 33 ............................. TCCAGCGAACCTATAAGGAGAACAACCGTCTCA 165453 29 96.6 32 ............................G TCTAGCGCTAATCCGTCCGCTTTGGTGGTGGC 165514 29 100.0 32 ............................. AGCATTCTCATCTATGGCACTGACGATATTTC 165575 29 93.1 32 .........................C..G GTTACAGTCAGTAGCAGCGGTCTTAAGGGTAA TG [165593] 165638 29 75.9 0 ...........G.A........AAT.TT. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 93.7 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : TGATTTCACCCCTTAATTTATGTCTGTCAGTAGACTAACTGAAACATTTTGAGAATCTTTGGGGTTGGCGACAGCGTCGGTGCTTCTGAAGCAGTGACTATGTAAGAATTGATTCAGAAGGAACCTCAAAAGATAAATTTATAGATGATTAATTTCACCTCCTCCTATATTTAATAATTAAACATTAATTGATAACACCAATTATAGTATATATTCAATTGATCAATTAGAGCGTTCAAACGGTTCCATTTAGGGGACGTTTTGACAAAAGTGGGGTCATGGTCAGGACAAGTTGATTGTTTTCGATTAGATATTCCCCCTTCATTGGCTGGTTGAACGCACGACATTTTTCAATGAAGCGATTAAATGCTGATTGGGTAGATGTGATTAGAATTGCTGATGGGCTAATACGGGCGTATGATGGATGTAGTAGATTGTAAGTTAATGAAAATACGGCAATGATGATTTCTAAAACGTTGATTTAACGGTATTTACTTAGT # Right flank : CTCAGAAGCAAAAGTGACCACCTTTGGAATATTAACGAAAATAGCCTAGAACCCGCCATCGTTTTAACGATAAGGAGTTCTAGGCTATTTATTGTCGTTTTGAATCAATAAACCCACTGGTCAGGTTTCCGGTTTACATATGAACGATTGCGCCACCATCTTTAATGTGAGTGGTCTTCTTAGCGGGATTCTTCAAGCTGTACTTGAAGGCGTTCATCTTTTCTTTTTTGTAGGAAGCATAGTCGGTGAGTAGTAACAACTTGCCTTTACGGTAAAGAACGCTGTCACTATGACCGCCTAAGACCATGCCACTTTTTTGGGTATGGCCCACGATACGGTAGACGTGAGTCCGCAGCTTCTTATACTTAAGATTGACCGTCTTTATTTGGGACATATTGGAATATTGAATGATGTAGTGCTTGCTAGCAATCTTGCAAAAGTAGCCGAATCCCTCAGCTGAGCTGGTTCGCTTACCTTGGTAAGTGCCCCGCAAGACCTTA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 165979-164241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCR01000006.1 Levilactobacillus spicheri strain LP38 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165978 29 100.0 32 ............................. CATCGATGCGTTGACGCGGTTGAAAGATGTTT 165917 29 96.6 32 ............................T AATGGCCGCTTTCTTACGATCACTAAATCGGC 165856 29 96.6 32 ............................T AGTGGCGATTTTTTCAACGATGAAAGGTAATG 165795 29 96.6 32 ............................T CACTCGGAAGTGCCCCAACTTGTTCTTTTCAG 165734 29 100.0 32 ............................. ATTGGAACTTATTAATATGCTTAATAACTTTT 165673 29 100.0 32 ............................. GGCTACTCGGCTCACACCTACCAGCCCAGCTA 165612 29 100.0 32 ............................. TCAGCTTCGGCCGCGGCCGTGTTGTCCGCGAT 165551 29 96.6 32 ............................T ACTTGCGCAACGGCTTTGACCTTGCAGCGGCA 165490 29 96.6 32 ............................T AATTTATTATTTATCATACATAATAAATAATC 165429 29 100.0 32 ............................. AATCGCCGTGATGGTCGCGAACTCACCGATGA 165368 29 100.0 32 ............................. CACAATGGCGATAGGGTCCAACCGGTGAGCGA 165307 29 100.0 32 ............................. TGGTATTTTTGACGCACGAGGCCGGGTTGCAA 165246 29 100.0 32 ............................. GTCCCTTTACCATCGTTTCCGGCACCCTTCAG 165185 29 100.0 32 ............................. AAGGACAAGTGGTATTACAATTCAGCATTGAA 165124 29 100.0 32 ............................. TCGCCAGAATCTGACCACTGTAAATCGTTCAG 165063 29 100.0 32 ............................. TTGTCGATGAAGTACCGTTGTCCCTTGCCTGT 165002 29 96.6 32 ............................T CAAGTTTCAAAATGAGTAAGGACACAATCTCC 164941 29 100.0 32 ............................. GCTACCTGTCTCAACCGGATAGAAGGTAATGC 164880 29 96.6 32 ............................T CTGATTGGAGAGTGTCAAAAATGGAAAATATC 164819 29 100.0 32 ............................. GGGATAACAACTCGGCTATCTCATTCCTTGAC 164758 29 100.0 32 ............................. GACCTGACCGGCCAAACGGTCACTGGTGAAGG 164697 29 100.0 32 ............................. AGGACGGGTGAAATAATTGACAGTGAAGAGTT 164636 29 96.6 32 ............C................ GATGAGACCGTCCGCGACACTGACGGCATGCC 164575 29 96.6 32 ............C................ GGCTGATGGCTTCGACGGGGATGCCTACCGCC 164514 29 96.6 32 ............C................ ATCGGGTCACTGCCCAGGGCGGCGATCATGTC 164453 29 96.6 32 ............................T GAGGAGCTGACACCGGCTTATCTCGTTCAGAA 164392 29 96.6 32 ............................T GGCGCTGTCGCGTTCCCGCGGCAATCTCCGCT 164331 29 89.7 32 ............C..........A..C.. TCGTTGTTGGATCCATCGATTTTTGTCAGCAA 164270 29 82.8 0 ...........GCA.........A...T. | A [164251] ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.6 32 GTATTCCCCACATGTGTGGGGGTGATTCC # Left flank : GCGCAGGACCAGATCATGTCGATTGGTGCGGTAAAACGCAACGCCAATGGTCAGGTGGAATCGTTTCAACGGTTGATCCAAATTGAGGGGACGGTGCCGCCAAAGATTACGGCCCTGACCGGGATAACGACTGAACAGTTACGAACCCAAGGTGCGGATTTAGCTACGGCATTGAAAGACTTACGTGAGTTCGTTCAGGACTTGGCAATTGTTGGGTACAACGTTGGCTTTGACGAAAAATTTTTAAACGTTGGTTATCAACTTGTTGAACAACCAAATTTGACGAATACTTTTCGCGATTTAATGCCAATGGTGAAAAATGTTCAGGAATTTTTAGACAATTACCGATTAGCAACGGTTTTGGAGAAGTACAAAATTAAAAACACTGATCCGCATCACGCACTAGCCGATGCTCAGGCGACCCTAGCTTTAGCGGACAAGTTAATAAAAAACGGTGATTTCCGAATTTAGGAATGCCGGTTTAATGGGATTTGTTTAGT # Right flank : AACCTGCTTCCATCTCACCCCTTAGCCACTCATTAGCCGTCTCTTCAAAGAACTGCCGGAAAGCCACATAGGCGTAGCCCTGCCAGGATTGGCGGTTCTTGCGGTAGGCCGCAGGGATGATGCGAGCAACGGCTGTGTGTAGATTTTCGATTAGGACCGAATTATGTTCCAGCCGCGTGGCCAAGCGACCAGAAAGGCCCAGCTGAGCCTCGGCCATGCGACAGACCGCCGCTTTGGCTTGGTAAATCACGCGCGCCATCTCATAGAGTCGTGCGTGGTCATGATCGGCTAAAGCTGCCATTAGCTGAGCTGTTGCCGTGGGGATTCCGCCCACAGTGGTGAGCGATTGGGTTAGATTGGTAAATTCCAAGTGGGTGAGTAATTTTTCAGACGGCTGGCCGACGGATGGGGCTATCTGAGACGAACTTAATGCCGCTTGGTTAGCGCCAGCTGAGGATGATTGTGTGGGAACGCTAATCGCTGGGCGCGTATTAAGTGTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176680-175816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZCR01000006.1 Levilactobacillus spicheri strain LP38 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 176679 29 100.0 32 ............................. ATCGCTGGGGAAGATACGCGGGTCAGACAGTG 176618 29 96.6 32 ............................T GTCGTTTGAAATGCGGCGACCAAGCTGATTAC 176557 29 100.0 32 ............................. ATAAGCTGTACTACTACCCCGAGAACAAGACT 176496 29 100.0 32 ............................. GACCCGGACCGGAAGCTGTGGGGTGAGTACGT 176435 29 100.0 32 ............................. ACCATCTACGAGATGACCTATGAGACCGTCTC 176374 29 96.6 32 ............................T AGATATTTGACCCCGAAAAGGTCGTCTTTCAT 176313 29 100.0 32 ............................. GTAAGCCGCCAGAACCGGAATTGCAATCGGAA 176252 29 100.0 32 ............................. TTTGCCCCATGTCTTTGGCCGGTTCTTTGGTC 176191 29 96.6 31 ............................T ATGAGGCCCAGTACAAGGCTACGATGGACTA T [176165] 176130 29 82.8 32 ...........GTA...A..........T CGGCAGCTTACTAAACGAATCCAACAGCTGGC 176069 29 79.3 32 ........T..GTA.........A...T. AAATTGTCAATCGTTCCCACGATAAACGGCGA 176008 28 75.9 136 ..G...T............A.A-...T.T ATTCTGTTATAGGATGACTTTAGTGCTTACATTTTATTCATTCCTTGCAGTGAGGGTTCACGGTAACGTTTAATAATTTCCTGGGGAAAGGGTTGTAGACGCTTGCTCTGGTCAATTGAAAAATGCTAAAATTGTA 175844 28 82.8 0 AC...........-....A.........G | T [175834] ========== ====== ====== ====== ============================= ======================================================================================================================================== ================== 13 29 93.1 41 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : CCGTTGTCGCCAATCGAGATGGAGACCATCAACGACTGGTTGAAGCAGGACCACTACCAACCGGAGCTGATCCAGTTGGCGCTGAAGGAGTCCGTCTTGAATCAGGTCTATAACTTGAAGTATATGGACCGCATCCTGGGCAACTGGGAGAAGAAAAACTTACGGACGGCCGCGCAGGTCCAACAGGAACGGGCGCGTCAGGCTGACCGGCAGGCGCCGAAGTCGGGCGCCCCGGGTAACGGGGGCGATTCAACGATTCCGGATGTGCCAATTTTTAAGTTAACGGATTAGGTGAAGGGGGCGCGATGCGAGAGCACGCGGCCTTTTTTGATGGGAGAATGAGATGAAAATCAGTTTAAACGATATTTTACGCGTCAGGGTGAACGGGGATTGGCATTCGAAGAATTTTTAGGTATGCTGGGGTCATGGTCAAAACACAAGTTAATGAAAAACGGCGATTTTGAAATTTTAAAAGGTTGATATACCGGGATTTGTTTAGT # Right flank : TTGTAATTATGCTATTTTATCTGATGGCATTTCGTAATCCCCACAGTTGTGGGGCGAAAAATAAAAGAACTTGTAATTATGCTATTTAATTTGAAATGTCCTTTCATTTTTGATCCTTATGTGCTAAGGTAAACATATAAATTAAAGACATAGCCCGGAAATTTAATAACAGAGACGGTGTTTTTGATTTGGGAAATGAGACCGCTTACTAATTTAATTATAAAGCGAAGTGTGATACATATAAATACTTGGGGAGTGAAAAAAAGTGAATTCGAAATTATCTGCTAGTGAAACTAGTCTGTGGGCCAAAAAAAATACGGAGAACGGTGAGCAGTGCTGGACACCCCTCGTGGTCCATTTGACGGACGCTGCAAACGTGATGAATTGGCTCTATTACCATTGGCTAGATGAGGGCCAACGTCAGTTTCTAACGATCACGTTACCAGACGAAGAGATGCAAAAGCTGGTTAAGTTTCTCGGATTCTTCCATGATTTCGGTA # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.79, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //