Array 1 638937-638297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029593.1 Salmonella enterica subsp. enterica serovar Typhimurium strain DA34827 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 638936 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 638875 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 638814 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 638753 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 638692 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 638631 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 638570 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 638509 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 638448 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 638387 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 638326 29 96.6 0 A............................ | A [638299] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 656683-655069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029593.1 Salmonella enterica subsp. enterica serovar Typhimurium strain DA34827 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 656682 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 656621 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 656560 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 656499 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 656438 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 656377 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 656316 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 656255 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 656194 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 656133 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 656072 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 656011 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 655950 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 655889 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 655828 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 655767 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 655706 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 655645 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 655584 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 655523 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 655462 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 655401 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 655340 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 655279 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 655218 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 655157 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 655096 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //